Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DQM98_RS15205 Genome accession   NZ_LS483297
Coordinates   2917606..2918235 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain NCTC11023     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2912606..2923235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM98_RS15190 (NCTC11023_02904) helD 2912848..2914902 (-) 2055 WP_000420536.1 DNA helicase IV -
  DQM98_RS15195 (NCTC11023_02905) yccF 2915025..2915471 (+) 447 WP_001261235.1 YccF domain-containing protein -
  DQM98_RS15200 (NCTC11023_02906) yccS 2915481..2917643 (+) 2163 WP_000875061.1 YccS family putative transporter -
  DQM98_RS15205 (NCTC11023_02907) sxy/tfoX 2917606..2918235 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  DQM98_RS15210 (NCTC11023_02908) sulA 2918454..2918963 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  DQM98_RS15220 (NCTC11023_02909) ompA 2919320..2920360 (+) 1041 WP_000750416.1 porin OmpA -
  DQM98_RS15225 (NCTC11023_02910) matP 2920436..2920888 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  DQM98_RS15230 (NCTC11023_02911) ycbZ 2921074..2922834 (+) 1761 WP_089622268.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1135432 DQM98_RS15205 WP_000839153.1 2917606..2918235(-) (sxy/tfoX) [Escherichia coli strain NCTC11023]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1135432 DQM98_RS15205 WP_000839153.1 2917606..2918235(-) (sxy/tfoX) [Escherichia coli strain NCTC11023]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment