Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   B6E87_RS01600 Genome accession   NZ_LS398099
Coordinates   363502..364863 (+) Length   453 a.a.
NCBI ID   WP_080122191.1    Uniprot ID   -
Organism   Chlamydia suis isolate 9-1b     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 358502..369863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6E87_RS01575 accD 358569..359496 (-) 928 Protein_296 acetyl-CoA carboxylase, carboxyltransferase subunit beta -
  B6E87_RS01580 - 359567..360187 (-) 621 WP_080122328.1 superoxide dismutase -
  B6E87_RS01585 - 360320..362101 (-) 1782 WP_080122188.1 phospho-sugar mutase -
  B6E87_RS01590 - 362248..362715 (-) 468 WP_080122189.1 DUF5070 domain-containing protein -
  B6E87_RS01595 rnc 362823..363518 (+) 696 WP_080122190.1 ribonuclease III -
  B6E87_RS01600 radA 363502..364863 (+) 1362 WP_080122191.1 DNA repair protein RadA Machinery gene
  B6E87_RS01605 - 364841..365596 (+) 756 WP_080122192.1 hydroxymethylbilane synthase -
  B6E87_RS01610 - 365670..366227 (+) 558 WP_080125145.1 hypothetical protein -
  B6E87_RS01615 - 366287..366631 (+) 345 WP_143291260.1 hypothetical protein -
  B6E87_RS01620 pknD 366718..369510 (-) 2793 WP_080125147.1 serine/threonine-protein kinase PknD -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49657.30 Da        Isoelectric Point: 8.3179

>NTDB_id=1135113 B6E87_RS01600 WP_080122191.1 363502..364863(+) (radA) [Chlamydia suis isolate 9-1b]
MTTKTKTLWGCTTCGSYSPKWLGQCPGCLHWNTLVEEKLPYKPNTTSLPSSTAPIPLNTVEFQEEIRLYTRAPGWNRLLG
GGTVRGSLTLLGGEPGIGKSTLLLQISSQFAKQGYSVLYVCGEESVSQTSLRAQRLNISSSNIFLFPETNLDDIKRQITN
LTPDILVIDSIQIIFSPSLSSAPGSVAQVRETTAELMHLAKQKQITTFIIGHVTKSGDIAGPRILEHLVDTVLYFEGNAH
ANYRMIRSVKNRFGPTNELLILAMQTNGLREVENPSGLFLQEKIVETTGSTIIPIVEGSETLLVEMQALVSSSPFSNPVR
KTSGFDPNRFSLLLAVLEKRANVKLYTSDVFLSIAGGLKISQPSADLGAVLSVVSSLYNRFLPKNYTYTGEIGLGGEIRH
VTHIESRIKESILMGFKGIVLPFGQMKGLPEEFLDQIDIIGVKTIKDAVRLLQ

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1135113 B6E87_RS01600 WP_080122191.1 363502..364863(+) (radA) [Chlamydia suis isolate 9-1b]
ATGACAACAAAAACTAAAACACTATGGGGTTGTACGACATGCGGCTCTTATTCTCCAAAATGGCTAGGACAATGTCCTGG
GTGTCTTCACTGGAATACTTTGGTCGAAGAAAAACTTCCTTATAAACCAAACACCACGTCCCTACCCAGCTCCACAGCCC
CAATACCTCTAAACACTGTAGAATTTCAGGAAGAGATCCGACTGTATACTCGTGCTCCAGGATGGAATCGCCTTCTTGGA
GGAGGGACTGTTCGCGGTAGTTTAACCCTGCTAGGAGGAGAGCCCGGCATTGGAAAATCCACCCTATTGCTTCAAATTTC
TTCTCAATTTGCCAAACAAGGCTATTCAGTATTGTATGTTTGTGGGGAAGAATCCGTGTCCCAAACTTCATTACGCGCAC
AACGACTAAACATCTCTAGCAGCAATATTTTTCTATTCCCAGAAACAAACTTAGACGATATCAAACGACAGATCACGAAT
CTTACTCCAGATATCTTAGTCATAGATTCTATTCAGATCATTTTTTCTCCATCGCTAAGCTCTGCTCCAGGATCTGTTGC
CCAAGTCAGGGAGACCACAGCAGAACTTATGCATCTCGCGAAACAAAAACAGATAACGACCTTTATTATTGGGCACGTTA
CCAAATCAGGAGACATCGCAGGACCTCGTATTCTTGAACATTTAGTAGATACAGTCCTTTATTTCGAAGGCAATGCACAT
GCCAATTATCGCATGATCCGCTCCGTAAAAAACCGCTTCGGCCCAACTAACGAGTTACTGATTCTTGCCATGCAGACAAA
TGGATTACGTGAAGTAGAAAATCCTTCGGGACTTTTTTTACAAGAAAAAATTGTAGAAACAACCGGCTCTACCATTATTC
CTATTGTAGAGGGATCAGAAACGCTTCTTGTCGAAATGCAAGCGCTTGTTTCCTCATCTCCATTCTCAAACCCCGTACGA
AAAACTTCTGGATTTGACCCCAACCGATTCTCTTTGCTCTTAGCGGTTTTAGAAAAAAGAGCAAATGTTAAATTATACAC
TTCCGATGTCTTTCTCTCTATAGCAGGAGGTTTAAAAATCTCACAACCTTCAGCAGATTTGGGAGCGGTGCTATCGGTCG
TTTCTTCCCTATATAATCGCTTTTTACCTAAAAACTATACCTATACTGGGGAAATTGGACTGGGAGGGGAGATTCGGCAC
GTTACACACATAGAATCCCGCATAAAAGAGAGTATTCTTATGGGATTTAAAGGCATTGTTCTGCCTTTCGGGCAAATGAA
AGGTTTACCTGAAGAATTTTTGGATCAAATTGACATTATTGGAGTAAAAACAATCAAAGATGCTGTCCGCTTATTACAAT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(69-217)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(360-450)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.465

100

0.488
  radA Streptococcus pneumoniae Rx1

47.566

99.779

0.475
  radA Streptococcus pneumoniae D39

47.566

99.779

0.475
  radA Streptococcus pneumoniae R6

47.566

99.779

0.475
  radA Streptococcus pneumoniae TIGR4

47.566

99.779

0.475
  radA Streptococcus mitis NCTC 12261

47.345

99.779

0.472
  radA Streptococcus mitis SK321

47.111

99.338

0.468

Multiple sequence alignment