Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   B6F13_RS01625 Genome accession   NZ_LS398098
Coordinates   364741..366102 (+) Length   453 a.a.
NCBI ID   WP_080123701.1    Uniprot ID   -
Organism   Chlamydia suis isolate 5-27b     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 359741..371102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6F13_RS01600 accD 359843..360736 (-) 894 WP_035406132.1 acetyl-CoA carboxylase, carboxyltransferase subunit beta -
  B6F13_RS01605 - 360807..361427 (-) 621 WP_080126936.1 superoxide dismutase -
  B6F13_RS01610 - 361559..363340 (-) 1782 WP_080126604.1 phospho-sugar mutase -
  B6F13_RS01615 - 363487..363954 (-) 468 WP_080126605.1 DUF5070 domain-containing protein -
  B6F13_RS01620 rnc 364062..364757 (+) 696 WP_080126606.1 ribonuclease III -
  B6F13_RS01625 radA 364741..366102 (+) 1362 WP_080123701.1 DNA repair protein RadA Machinery gene
  B6F13_RS01630 - 366080..366835 (+) 756 WP_080121354.1 hydroxymethylbilane synthase -
  B6F13_RS01635 - 366908..367468 (+) 561 WP_080126607.1 hypothetical protein -
  B6F13_RS01640 - 367528..367872 (+) 345 WP_162533497.1 hypothetical protein -
  B6F13_RS01645 pknD 367959..370751 (-) 2793 WP_080126609.1 serine/threonine-protein kinase PknD -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49651.16 Da        Isoelectric Point: 7.7237

>NTDB_id=1135107 B6F13_RS01625 WP_080123701.1 364741..366102(+) (radA) [Chlamydia suis isolate 5-27b]
MTTKTKTQWGCTTCGSYSPKWLGQCPGCLNWNTLVEEKLPYKPNTTSLPSSTAPIPLNTVEFQEEIRLHTRAPGWNRLLG
GGTVRGSLTLLGGEPGIGKSTLLLQISSQFAQQGYSVLYVCGEESVSQTSLRAQRLNISSSNIFLFPETNLDDIKRQITN
LNPDILVIDSIQIIFSPSLSSAPGSVAQVRETTAELMHLAKQKQITTFIIGHVTKSGEIAGPRILEHLVDTVLYFEGNAH
ANYRMIRSVKNRFGPTNELLILAMETNGLREVENPSGLFLQEKIVETTGSTIIPIVEGSETLLVEMQALVSSSPFSNPVR
KTSGFDPNRFSLLLAVLEKRANVKLYTSDVFLSIAGGLKISQPSADLGAVLSVVSSLYNRFLPKNYTYTGEIGLGGEIRH
VTHIESRIKESILMGFKGIVLPFGQMKGLPEEFLDQIDIIGVKTIKDAVRLLQ

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1135107 B6F13_RS01625 WP_080123701.1 364741..366102(+) (radA) [Chlamydia suis isolate 5-27b]
ATGACAACAAAAACTAAAACACAATGGGGTTGTACGACCTGCGGCTCTTATTCTCCAAAATGGCTAGGACAATGTCCCGG
GTGTCTTAACTGGAATACTTTGGTCGAAGAAAAACTTCCTTATAAACCAAACACCACGTCCCTACCCAGCTCCACAGCCC
CAATACCTCTAAACACTGTAGAATTTCAGGAAGAGATCCGACTGCATACTCGTGCTCCAGGATGGAATCGCCTTCTTGGA
GGAGGGACTGTTCGCGGTAGTTTAACCCTGCTAGGAGGAGAGCCCGGCATTGGAAAATCCACCCTATTGCTTCAAATTTC
TTCTCAATTTGCCCAACAAGGCTATTCAGTATTGTATGTTTGTGGGGAAGAATCCGTGTCCCAAACTTCATTACGCGCAC
AACGACTAAACATCTCTAGCAGCAATATTTTTCTATTCCCAGAAACAAACTTAGACGATATCAAACGACAGATCACAAAT
CTTAATCCAGATATCTTAGTCATAGATTCTATTCAGATCATTTTTTCTCCATCGCTAAGCTCTGCTCCAGGATCTGTTGC
CCAAGTCAGGGAGACCACAGCAGAACTTATGCATCTCGCGAAACAAAAACAGATAACGACCTTTATTATTGGGCACGTTA
CCAAATCAGGAGAGATCGCAGGACCTCGTATTCTTGAACATTTAGTAGATACAGTTCTTTATTTCGAAGGCAATGCACAT
GCCAATTATCGCATGATCCGCTCCGTAAAAAACCGCTTCGGCCCAACTAACGAGTTACTGATTCTTGCCATGGAGACGAA
TGGATTACGTGAAGTAGAAAATCCTTCGGGACTTTTTTTACAAGAAAAAATTGTAGAAACAACCGGCTCTACCATTATTC
CTATTGTAGAGGGATCAGAAACGCTTCTTGTCGAAATGCAAGCGCTTGTTTCCTCATCTCCATTCTCAAACCCCGTACGA
AAAACTTCTGGATTTGATCCCAACCGATTCTCTTTGCTCTTAGCGGTTTTAGAAAAAAGAGCAAATGTTAAATTATACAC
TTCCGACGTCTTTCTCTCTATAGCAGGAGGTTTAAAAATCTCACAACCTTCAGCAGATTTGGGAGCGGTGCTATCGGTCG
TTTCTTCCCTATATAATCGCTTTTTACCTAAAAACTATACCTATACTGGGGAAATCGGACTGGGAGGGGAGATTCGGCAC
GTTACACACATAGAATCCCGCATAAAAGAGAGTATTCTTATGGGATTTAAAGGCATTGTTCTGCCTTTCGGGCAAATGAA
AGGTTTACCTGAAGAATTTTTGGATCAAATTGACATTATTGGAGTAAAAACAATCAAAGATGCTGTCCGCTTATTACAAT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(67-217)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(360-450)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

100

0.49
  radA Streptococcus pneumoniae Rx1

47.566

99.779

0.475
  radA Streptococcus pneumoniae D39

47.566

99.779

0.475
  radA Streptococcus pneumoniae R6

47.566

99.779

0.475
  radA Streptococcus pneumoniae TIGR4

47.566

99.779

0.475
  radA Streptococcus mitis NCTC 12261

47.345

99.779

0.472
  radA Streptococcus mitis SK321

47.111

99.338

0.468

Multiple sequence alignment