Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JMX41_RS09700 Genome accession   NZ_LR898874
Coordinates   2016128..2016757 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain MSB1_4I isolate MSB1_4I     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2011128..2021757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMX41_RS09680 ycbZ 2011517..2013277 (-) 1761 WP_000156477.1 Lon protease family protein -
  JMX41_RS09685 matP 2013463..2013915 (+) 453 WP_000877175.1 macrodomain Ter protein MatP -
  JMX41_RS09690 ompA 2013991..2015043 (-) 1053 WP_000750418.1 porin OmpA -
  JMX41_RS09695 sulA 2015400..2015909 (-) 510 WP_000288705.1 SOS-induced cell division inhibitor SulA -
  JMX41_RS09700 sxy/tfoX 2016128..2016757 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JMX41_RS09705 yccS 2016720..2018882 (-) 2163 WP_001571221.1 YccS family putative transporter -
  JMX41_RS09710 yccF 2018892..2019338 (-) 447 WP_001261235.1 YccF domain-containing protein -
  JMX41_RS09715 helD 2019461..2021515 (+) 2055 WP_001571222.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1134847 JMX41_RS09700 WP_000839153.1 2016128..2016757(+) (sxy/tfoX) [Escherichia coli strain MSB1_4I isolate MSB1_4I]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1134847 JMX41_RS09700 WP_000839153.1 2016128..2016757(+) (sxy/tfoX) [Escherichia coli strain MSB1_4I isolate MSB1_4I]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment