Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JMX26_RS13960 Genome accession   NZ_LR898868
Coordinates   2865265..2865894 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain MSB1_1D isolate MSB1_1D     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2860265..2870894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMX26_RS13945 helD 2860507..2862561 (-) 2055 WP_001295354.1 DNA helicase IV -
  JMX26_RS13950 yccF 2862684..2863130 (+) 447 WP_001261235.1 YccF domain-containing protein -
  JMX26_RS13955 yccS 2863140..2865302 (+) 2163 WP_000875061.1 YccS family putative transporter -
  JMX26_RS13960 sxy/tfoX 2865265..2865894 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JMX26_RS13965 sulA 2866113..2866622 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  JMX26_RS13970 ompA 2866979..2868019 (+) 1041 WP_000750416.1 porin OmpA -
  JMX26_RS13975 matP 2868095..2868547 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  JMX26_RS13980 ycbZ 2868733..2870493 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1134828 JMX26_RS13960 WP_000839153.1 2865265..2865894(-) (sxy/tfoX) [Escherichia coli strain MSB1_1D isolate MSB1_1D]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1134828 JMX26_RS13960 WP_000839153.1 2865265..2865894(-) (sxy/tfoX) [Escherichia coli strain MSB1_1D isolate MSB1_1D]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment