Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JMW25_RS16705 Genome accession   NZ_LR890751
Coordinates   3386763..3387359 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain KSB1_8C isolate KSB1_8C     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3381763..3392359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMW25_RS16690 helD 3381971..3384025 (-) 2055 WP_020324408.1 DNA helicase IV -
  JMW25_RS16695 - 3384150..3384596 (+) 447 WP_002898425.1 YccF domain-containing protein -
  JMW25_RS16700 yccS 3384614..3386749 (+) 2136 WP_004147856.1 YccS family putative transporter -
  JMW25_RS16705 sxy/tfoX 3386763..3387359 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  JMW25_RS16710 sulA 3387708..3388217 (+) 510 WP_004893150.1 SOS-induced cell division inhibitor SulA -
  JMW25_RS16715 ompA 3388570..3389640 (+) 1071 WP_002898408.1 porin OmpA -
  JMW25_RS16720 matP 3389772..3390224 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  JMW25_RS16725 - 3390410..3392167 (+) 1758 WP_020324406.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=1134766 JMW25_RS16705 WP_004179217.1 3386763..3387359(-) (sxy/tfoX) [Klebsiella pneumoniae strain KSB1_8C isolate KSB1_8C]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1134766 JMW25_RS16705 WP_004179217.1 3386763..3387359(-) (sxy/tfoX) [Klebsiella pneumoniae strain KSB1_8C isolate KSB1_8C]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment