Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JMW72_RS16535 Genome accession   NZ_LR890722
Coordinates   3356784..3357380 (-) Length   198 a.a.
NCBI ID   WP_004150836.1    Uniprot ID   A0A0H3GL50
Organism   Klebsiella pneumoniae isolate KSB1_1H     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3351784..3362380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMW72_RS16520 helD 3351992..3354046 (-) 2055 WP_040147912.1 DNA helicase IV -
  JMW72_RS16525 - 3354171..3354617 (+) 447 WP_002898425.1 YccF domain-containing protein -
  JMW72_RS16530 yccS 3354635..3356770 (+) 2136 WP_002898422.1 YccS family putative transporter -
  JMW72_RS16535 sxy/tfoX 3356784..3357380 (-) 597 WP_004150836.1 TfoX/Sxy family DNA transformation protein Regulator
  JMW72_RS16540 sulA 3357729..3358238 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  JMW72_RS16545 ompA 3358591..3359661 (+) 1071 WP_002898408.1 porin OmpA -
  JMW72_RS16550 matP 3359793..3360245 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  JMW72_RS16555 - 3360431..3362188 (+) 1758 WP_004147851.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22576.15 Da        Isoelectric Point: 10.1298

>NTDB_id=1134720 JMW72_RS16535 WP_004150836.1 3356784..3357380(-) (sxy/tfoX) [Klebsiella pneumoniae isolate KSB1_1H]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1134720 JMW72_RS16535 WP_004150836.1 3356784..3357380(-) (sxy/tfoX) [Klebsiella pneumoniae isolate KSB1_1H]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCGGGCCGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3GL50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment