Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JMW19_RS16045 Genome accession   NZ_LR890714
Coordinates   3314166..3314795 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain MSB1_6C isolate MSB1_6C     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3309166..3319795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMW19_RS16030 helD 3309408..3311462 (-) 2055 WP_001550921.1 DNA helicase IV -
  JMW19_RS16035 yccF 3311585..3312031 (+) 447 WP_001261235.1 YccF domain-containing protein -
  JMW19_RS16040 yccS 3312041..3314203 (+) 2163 WP_001550920.1 YccS family putative transporter -
  JMW19_RS16045 sxy/tfoX 3314166..3314795 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JMW19_RS16050 sulA 3315014..3315523 (+) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  JMW19_RS16055 ompA 3315880..3316932 (+) 1053 WP_000750418.1 porin OmpA -
  JMW19_RS16060 matP 3317007..3317459 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  JMW19_RS16065 ycbZ 3317645..3319405 (+) 1761 WP_000156479.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1134697 JMW19_RS16045 WP_000839153.1 3314166..3314795(-) (sxy/tfoX) [Escherichia coli strain MSB1_6C isolate MSB1_6C]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1134697 JMW19_RS16045 WP_000839153.1 3314166..3314795(-) (sxy/tfoX) [Escherichia coli strain MSB1_6C isolate MSB1_6C]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment