Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JMX55_RS16500 Genome accession   NZ_LR890710
Coordinates   3332854..3333450 (-) Length   198 a.a.
NCBI ID   WP_004150836.1    Uniprot ID   A0A0H3GL50
Organism   Klebsiella pneumoniae isolate KSB2_9B     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3327854..3338450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMX55_RS16485 helD 3328062..3330116 (-) 2055 WP_032103554.1 DNA helicase IV -
  JMX55_RS16490 - 3330241..3330687 (+) 447 WP_002898425.1 YccF domain-containing protein -
  JMX55_RS16495 yccS 3330705..3332840 (+) 2136 WP_002898422.1 YccS family putative transporter -
  JMX55_RS16500 sxy/tfoX 3332854..3333450 (-) 597 WP_004150836.1 TfoX/Sxy family DNA transformation protein Regulator
  JMX55_RS16505 sulA 3333799..3334308 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  JMX55_RS16510 ompA 3334661..3335731 (+) 1071 WP_002898408.1 porin OmpA -
  JMX55_RS16515 matP 3335863..3336315 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  JMX55_RS16520 - 3336501..3338258 (+) 1758 WP_032414743.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22576.15 Da        Isoelectric Point: 10.1298

>NTDB_id=1134674 JMX55_RS16500 WP_004150836.1 3332854..3333450(-) (sxy/tfoX) [Klebsiella pneumoniae isolate KSB2_9B]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1134674 JMX55_RS16500 WP_004150836.1 3332854..3333450(-) (sxy/tfoX) [Klebsiella pneumoniae isolate KSB2_9B]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCGGGCCGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3GL50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment