Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   N919_RS07340 Genome accession   NZ_CP006686
Coordinates   1409277..1409594 (-) Length   105 a.a.
NCBI ID   WP_002851255.1    Uniprot ID   Q0P8E2
Organism   Campylobacter jejuni subsp. jejuni NCTC 11168-Kf1     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1404277..1414594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N919_RS07320 (N919_07325) ctsE 1405146..1406705 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  N919_RS07325 (N919_07330) ctsX 1406695..1407282 (-) 588 WP_002851370.1 membrane protein Machinery gene
  N919_RS07330 (N919_07335) ctsP 1407286..1407894 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  N919_RS07335 (N919_07340) ctsD 1407887..1409305 (-) 1419 WP_002851309.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  N919_RS07340 (N919_07345) ctsR 1409277..1409594 (-) 318 WP_002851255.1 hypothetical protein Machinery gene
  N919_RS07345 (N919_07350) nifJ 1409618..1413178 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  N919_RS07350 (N919_07355) - 1413271..1413912 (-) 642 WP_002851542.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 12702.64 Da        Isoelectric Point: 5.8722

>NTDB_id=113462 N919_RS07340 WP_002851255.1 1409277..1409594(-) (ctsR) [Campylobacter jejuni subsp. jejuni NCTC 11168-Kf1]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKINININ

Nucleotide


Download         Length: 318 bp        

>NTDB_id=113462 N919_RS07340 WP_002851255.1 1409277..1409594(-) (ctsR) [Campylobacter jejuni subsp. jejuni NCTC 11168-Kf1]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P8E2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

98.095

0.981

Multiple sequence alignment