Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JMW23_RS00700 Genome accession   NZ_LR890693
Coordinates   129700..130329 (+) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   A0A066SWI0
Organism   Escherichia coli strain MSB1_4E isolate MSB1_4E     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 124700..135329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMW23_RS00680 ycbZ 125090..126850 (-) 1761 WP_000156502.1 Lon protease family protein -
  JMW23_RS00685 matP 127036..127488 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  JMW23_RS00690 ompA 127564..128616 (-) 1053 WP_001346420.1 porin OmpA -
  JMW23_RS00695 sulA 128972..129481 (-) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  JMW23_RS00700 sxy/tfoX 129700..130329 (+) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JMW23_RS00705 yccS 130292..132454 (-) 2163 WP_000875041.1 YccS family putative transporter -
  JMW23_RS00710 yccF 132464..132910 (-) 447 WP_001261235.1 YccF domain-containing protein -
  JMW23_RS00715 helD 133033..135087 (+) 2055 WP_001295938.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=1134613 JMW23_RS00700 WP_000839151.1 129700..130329(+) (sxy/tfoX) [Escherichia coli strain MSB1_4E isolate MSB1_4E]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1134613 JMW23_RS00700 WP_000839151.1 129700..130329(+) (sxy/tfoX) [Escherichia coli strain MSB1_4E isolate MSB1_4E]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A066SWI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment