Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JMW95_RS15100 Genome accession   NZ_LR890651
Coordinates   3066996..3067625 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain MINF_2E isolate MINF_2E     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3061996..3072625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMW95_RS15085 helD 3062238..3064292 (-) 2055 WP_000420533.1 DNA helicase IV -
  JMW95_RS15090 yccF 3064415..3064861 (+) 447 WP_001261231.1 YccF domain-containing protein -
  JMW95_RS15095 yccS 3064871..3067033 (+) 2163 WP_000875020.1 YccS family putative transporter -
  JMW95_RS15100 sxy/tfoX 3066996..3067625 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JMW95_RS15105 sulA 3067844..3068353 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  JMW95_RS15110 ompA 3068710..3069750 (+) 1041 WP_000750416.1 porin OmpA -
  JMW95_RS15115 matP 3069826..3070278 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  JMW95_RS15120 ycbZ 3070464..3072224 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1134533 JMW95_RS15100 WP_000839153.1 3066996..3067625(-) (sxy/tfoX) [Escherichia coli strain MINF_2E isolate MINF_2E]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1134533 JMW95_RS15100 WP_000839153.1 3066996..3067625(-) (sxy/tfoX) [Escherichia coli strain MINF_2E isolate MINF_2E]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment