Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JMW87_RS16565 Genome accession   NZ_LR890648
Coordinates   3354433..3355029 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain INF266 isolate INF266     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3349433..3360029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMW87_RS16550 helD 3349641..3351695 (-) 2055 WP_023342915.1 DNA helicase IV -
  JMW87_RS16555 - 3351820..3352266 (+) 447 WP_021312905.1 YccF domain-containing protein -
  JMW87_RS16560 yccS 3352284..3354419 (+) 2136 WP_002898422.1 YccS family putative transporter -
  JMW87_RS16565 sxy/tfoX 3354433..3355029 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  JMW87_RS16570 sulA 3355378..3355887 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  JMW87_RS16575 ompA 3356240..3357310 (+) 1071 WP_032737546.1 porin OmpA -
  JMW87_RS16580 matP 3357441..3357893 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  JMW87_RS16585 - 3358079..3359836 (+) 1758 WP_004147851.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=1134510 JMW87_RS16565 WP_004179217.1 3354433..3355029(-) (sxy/tfoX) [Klebsiella pneumoniae strain INF266 isolate INF266]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1134510 JMW87_RS16565 WP_004179217.1 3354433..3355029(-) (sxy/tfoX) [Klebsiella pneumoniae strain INF266 isolate INF266]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment