Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JMW92_RS16240 Genome accession   NZ_LR890627
Coordinates   3277666..3278262 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae isolate KSB1_6F     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3272666..3283262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMW92_RS16225 helD 3272874..3274928 (-) 2055 WP_014907883.1 DNA helicase IV -
  JMW92_RS16230 - 3275053..3275499 (+) 447 WP_002898425.1 YccF domain-containing protein -
  JMW92_RS16235 yccS 3275517..3277652 (+) 2136 WP_002898422.1 YccS family putative transporter -
  JMW92_RS16240 sxy/tfoX 3277666..3278262 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  JMW92_RS16245 sulA 3278611..3279120 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  JMW92_RS16250 ompA 3279473..3280543 (+) 1071 WP_002898408.1 porin OmpA -
  JMW92_RS16255 matP 3280675..3281127 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  JMW92_RS16260 - 3281313..3283070 (+) 1758 WP_004224030.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=1134486 JMW92_RS16240 WP_004179217.1 3277666..3278262(-) (sxy/tfoX) [Klebsiella pneumoniae isolate KSB1_6F]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1134486 JMW92_RS16240 WP_004179217.1 3277666..3278262(-) (sxy/tfoX) [Klebsiella pneumoniae isolate KSB1_6F]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment