Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   JMW66_RS09885 Genome accession   NZ_LR890619
Coordinates   2126917..2127552 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain MINF_7A isolate MINF_7A     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2121917..2132552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMW66_RS09870 - 2122623..2123867 (+) 1245 WP_003113987.1 lipoprotein-releasing ABC transporter permease subunit -
  JMW66_RS09875 - 2123955..2124488 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  JMW66_RS09880 comA 2124619..2126844 (+) 2226 WP_023122000.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JMW66_RS09885 exbB 2126917..2127552 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  JMW66_RS09890 - 2127549..2127989 (+) 441 WP_003091161.1 biopolymer transporter ExbD -
  JMW66_RS09895 lpxK 2127989..2128987 (+) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  JMW66_RS09900 - 2129025..2129210 (+) 186 WP_201522640.1 Trm112 family protein -
  JMW66_RS09905 kdsB 2129210..2129974 (+) 765 WP_003106922.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  JMW66_RS09910 - 2129974..2130438 (+) 465 WP_003106924.1 low molecular weight protein-tyrosine-phosphatase -
  JMW66_RS09915 murB 2130435..2131454 (+) 1020 WP_017149173.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=1134426 JMW66_RS09885 WP_003091163.1 2126917..2127552(+) (exbB) [Pseudomonas aeruginosa strain MINF_7A isolate MINF_7A]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1134426 JMW66_RS09885 WP_003091163.1 2126917..2127552(+) (exbB) [Pseudomonas aeruginosa strain MINF_7A isolate MINF_7A]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81

Multiple sequence alignment