Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JMX12_RS16730 Genome accession   NZ_LR890616
Coordinates   3383468..3384064 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain INF359 isolate INF359     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3378468..3389064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMX12_RS16715 helD 3378676..3380730 (-) 2055 WP_004224033.1 DNA helicase IV -
  JMX12_RS16720 - 3380855..3381301 (+) 447 WP_004224032.1 YccF domain-containing protein -
  JMX12_RS16725 yccS 3381319..3383454 (+) 2136 WP_002898422.1 YccS family putative transporter -
  JMX12_RS16730 sxy/tfoX 3383468..3384064 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  JMX12_RS16735 sulA 3384413..3384922 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  JMX12_RS16740 ompA 3385275..3386345 (+) 1071 WP_002898408.1 porin OmpA -
  JMX12_RS16745 matP 3386476..3386928 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  JMX12_RS16750 - 3387114..3388871 (+) 1758 WP_004147851.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=1134405 JMX12_RS16730 WP_004179217.1 3383468..3384064(-) (sxy/tfoX) [Klebsiella pneumoniae strain INF359 isolate INF359]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1134405 JMX12_RS16730 WP_004179217.1 3383468..3384064(-) (sxy/tfoX) [Klebsiella pneumoniae strain INF359 isolate INF359]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment