Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JMW69_RS14685 Genome accession   NZ_LR890606
Coordinates   3032542..3033171 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain MINF_8D isolate MINF_8D     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3027542..3038171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMW69_RS14670 helD 3027784..3029838 (-) 2055 WP_001295354.1 DNA helicase IV -
  JMW69_RS14675 yccF 3029961..3030407 (+) 447 WP_001261235.1 YccF domain-containing protein -
  JMW69_RS14680 yccS 3030417..3032579 (+) 2163 WP_000875061.1 YccS family putative transporter -
  JMW69_RS14685 sxy/tfoX 3032542..3033171 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JMW69_RS14690 sulA 3033390..3033899 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  JMW69_RS14695 ompA 3034256..3035296 (+) 1041 WP_000750416.1 porin OmpA -
  JMW69_RS14700 matP 3035372..3035824 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  JMW69_RS14705 ycbZ 3036010..3037770 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1134382 JMW69_RS14685 WP_000839153.1 3032542..3033171(-) (sxy/tfoX) [Escherichia coli strain MINF_8D isolate MINF_8D]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1134382 JMW69_RS14685 WP_000839153.1 3032542..3033171(-) (sxy/tfoX) [Escherichia coli strain MINF_8D isolate MINF_8D]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment