Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JMW40_RS14275 Genome accession   NZ_LR890603
Coordinates   2966519..2967148 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain MSB1_8G isolate MSB1_8G     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2961519..2972148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMW40_RS14260 helD 2961761..2963815 (-) 2055 WP_001295354.1 DNA helicase IV -
  JMW40_RS14265 yccF 2963938..2964384 (+) 447 WP_001261235.1 YccF domain-containing protein -
  JMW40_RS14270 yccS 2964394..2966556 (+) 2163 WP_000875058.1 YccS family putative transporter -
  JMW40_RS14275 sxy/tfoX 2966519..2967148 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JMW40_RS14280 sulA 2967367..2967876 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  JMW40_RS14285 ompA 2968233..2969273 (+) 1041 WP_000750416.1 porin OmpA -
  JMW40_RS14290 matP 2969349..2969801 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  JMW40_RS14295 ycbZ 2969987..2971747 (+) 1761 WP_000152888.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1134360 JMW40_RS14275 WP_000839153.1 2966519..2967148(-) (sxy/tfoX) [Escherichia coli strain MSB1_8G isolate MSB1_8G]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1134360 JMW40_RS14275 WP_000839153.1 2966519..2967148(-) (sxy/tfoX) [Escherichia coli strain MSB1_8G isolate MSB1_8G]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment