Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JMW91_RS16540 Genome accession   NZ_LR890583
Coordinates   3377802..3378398 (-) Length   198 a.a.
NCBI ID   WP_004893148.1    Uniprot ID   A0A483M0T8
Organism   Klebsiella pneumoniae strain INF145 isolate INF145     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3372802..3383398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMW91_RS16525 helD 3373010..3375064 (-) 2055 WP_004179218.1 DNA helicase IV -
  JMW91_RS16530 - 3375189..3375635 (+) 447 WP_002898425.1 YccF domain-containing protein -
  JMW91_RS16535 yccS 3375653..3377788 (+) 2136 WP_002898422.1 YccS family putative transporter -
  JMW91_RS16540 sxy/tfoX 3377802..3378398 (-) 597 WP_004893148.1 TfoX/Sxy family DNA transformation protein Regulator
  JMW91_RS16545 sulA 3378747..3379256 (+) 510 WP_004893150.1 SOS-induced cell division inhibitor SulA -
  JMW91_RS16550 ompA 3379609..3380679 (+) 1071 WP_002898408.1 porin OmpA -
  JMW91_RS16555 matP 3380811..3381263 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  JMW91_RS16560 - 3381449..3383206 (+) 1758 WP_004147851.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22562.12 Da        Isoelectric Point: 10.1298

>NTDB_id=1134312 JMW91_RS16540 WP_004893148.1 3377802..3378398(-) (sxy/tfoX) [Klebsiella pneumoniae strain INF145 isolate INF145]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIGGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1134312 JMW91_RS16540 WP_004893148.1 3377802..3378398(-) (sxy/tfoX) [Klebsiella pneumoniae strain INF145 isolate INF145]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCAGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGGCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A483M0T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment