Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JMW96_RS16590 Genome accession   NZ_LR890569
Coordinates   3346061..3346657 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain INF144 isolate INF144     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3341061..3351657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMW96_RS16575 helD 3341269..3343323 (-) 2055 WP_004176653.1 DNA helicase IV -
  JMW96_RS16580 - 3343448..3343894 (+) 447 WP_021312905.1 YccF domain-containing protein -
  JMW96_RS16585 yccS 3343912..3346047 (+) 2136 WP_002898422.1 YccS family putative transporter -
  JMW96_RS16590 sxy/tfoX 3346061..3346657 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  JMW96_RS16595 sulA 3347006..3347515 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  JMW96_RS16600 ompA 3347868..3348938 (+) 1071 WP_002898408.1 porin OmpA -
  JMW96_RS16605 matP 3349070..3349522 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  JMW96_RS16610 - 3349708..3351465 (+) 1758 WP_023286206.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=1134264 JMW96_RS16590 WP_004179217.1 3346061..3346657(-) (sxy/tfoX) [Klebsiella pneumoniae strain INF144 isolate INF144]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1134264 JMW96_RS16590 WP_004179217.1 3346061..3346657(-) (sxy/tfoX) [Klebsiella pneumoniae strain INF144 isolate INF144]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment