Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JMX11_RS16590 Genome accession   NZ_LR890547
Coordinates   3356915..3357511 (-) Length   198 a.a.
NCBI ID   WP_004150836.1    Uniprot ID   A0A0H3GL50
Organism   Klebsiella pneumoniae strain INF142 isolate INF142     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3351915..3362511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMX11_RS16575 helD 3352123..3354177 (-) 2055 WP_002898429.1 DNA helicase IV -
  JMX11_RS16580 - 3354302..3354748 (+) 447 WP_002898425.1 YccF domain-containing protein -
  JMX11_RS16585 yccS 3354766..3356901 (+) 2136 WP_002898422.1 YccS family putative transporter -
  JMX11_RS16590 sxy/tfoX 3356915..3357511 (-) 597 WP_004150836.1 TfoX/Sxy family DNA transformation protein Regulator
  JMX11_RS16595 sulA 3357860..3358369 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  JMX11_RS16600 ompA 3358722..3359792 (+) 1071 WP_002898408.1 porin OmpA -
  JMX11_RS16605 matP 3359924..3360376 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  JMX11_RS16610 - 3360562..3362319 (+) 1758 WP_002898401.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22576.15 Da        Isoelectric Point: 10.1298

>NTDB_id=1134192 JMX11_RS16590 WP_004150836.1 3356915..3357511(-) (sxy/tfoX) [Klebsiella pneumoniae strain INF142 isolate INF142]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1134192 JMX11_RS16590 WP_004150836.1 3356915..3357511(-) (sxy/tfoX) [Klebsiella pneumoniae strain INF142 isolate INF142]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3GL50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment