Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JMX06_RS15440 Genome accession   NZ_LR890536
Coordinates   3203702..3204331 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain MSB1_8B isolate MSB1_8B     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3198702..3209331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMX06_RS15425 helD 3198944..3200998 (-) 2055 WP_022645482.1 DNA helicase IV -
  JMX06_RS15430 yccF 3201121..3201567 (+) 447 WP_001261235.1 YccF domain-containing protein -
  JMX06_RS15435 yccS 3201577..3203739 (+) 2163 WP_000875041.1 YccS family putative transporter -
  JMX06_RS15440 sxy/tfoX 3203702..3204331 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JMX06_RS15445 sulA 3204550..3205059 (+) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  JMX06_RS15450 ompA 3205416..3206456 (+) 1041 WP_022645481.1 porin OmpA -
  JMX06_RS15455 matP 3206533..3206985 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  JMX06_RS15460 ycbZ 3207171..3208931 (+) 1761 WP_000156473.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1134170 JMX06_RS15440 WP_000839153.1 3203702..3204331(-) (sxy/tfoX) [Escherichia coli strain MSB1_8B isolate MSB1_8B]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1134170 JMX06_RS15440 WP_000839153.1 3203702..3204331(-) (sxy/tfoX) [Escherichia coli strain MSB1_8B isolate MSB1_8B]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTAGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment