Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JMW57_RS06030 Genome accession   NZ_LR890508
Coordinates   1220412..1221041 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain MSB1_9I isolate MSB1_9I     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1215412..1226041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMW57_RS06015 helD 1215654..1217708 (-) 2055 WP_001295354.1 DNA helicase IV -
  JMW57_RS06020 yccF 1217831..1218277 (+) 447 WP_001261235.1 YccF domain-containing protein -
  JMW57_RS06025 yccS 1218287..1220449 (+) 2163 WP_000875061.1 YccS family putative transporter -
  JMW57_RS06030 sxy/tfoX 1220412..1221041 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JMW57_RS06035 sulA 1221260..1221769 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  JMW57_RS06040 ompA 1222126..1223166 (+) 1041 WP_000750416.1 porin OmpA -
  JMW57_RS06045 matP 1223242..1223694 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  JMW57_RS06050 ycbZ 1223880..1225640 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1134138 JMW57_RS06030 WP_000839153.1 1220412..1221041(-) (sxy/tfoX) [Escherichia coli strain MSB1_9I isolate MSB1_9I]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1134138 JMW57_RS06030 WP_000839153.1 1220412..1221041(-) (sxy/tfoX) [Escherichia coli strain MSB1_9I isolate MSB1_9I]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment