Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JMX76_RS00465 Genome accession   NZ_LR890500
Coordinates   95267..95863 (+) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain KSB1_5H isolate KSB1_5H     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 90267..100863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMX76_RS00445 - 90459..92216 (-) 1758 WP_062920818.1 Lon protease family protein -
  JMX76_RS00450 matP 92402..92854 (+) 453 WP_064162266.1 macrodomain Ter protein MatP -
  JMX76_RS00455 ompA 92986..94056 (-) 1071 WP_002898408.1 porin OmpA -
  JMX76_RS00460 sulA 94409..94918 (-) 510 WP_004893150.1 SOS-induced cell division inhibitor SulA -
  JMX76_RS00465 sxy/tfoX 95267..95863 (+) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  JMX76_RS00470 yccS 95877..98012 (-) 2136 WP_002898422.1 YccS family putative transporter -
  JMX76_RS00475 - 98030..98476 (-) 447 WP_002898425.1 YccF domain-containing protein -
  JMX76_RS00480 helD 98601..100655 (+) 2055 WP_014907883.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=1134111 JMX76_RS00465 WP_004179217.1 95267..95863(+) (sxy/tfoX) [Klebsiella pneumoniae strain KSB1_5H isolate KSB1_5H]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1134111 JMX76_RS00465 WP_004179217.1 95267..95863(+) (sxy/tfoX) [Klebsiella pneumoniae strain KSB1_5H isolate KSB1_5H]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment