Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JMV82_RS16580 Genome accession   NZ_LR890493
Coordinates   3358400..3358996 (-) Length   198 a.a.
NCBI ID   WP_004150836.1    Uniprot ID   A0A0H3GL50
Organism   Klebsiella pneumoniae strain INF018 isolate INF018     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3353400..3363996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMV82_RS16565 helD 3353608..3355662 (-) 2055 WP_040147912.1 DNA helicase IV -
  JMV82_RS16570 - 3355787..3356233 (+) 447 WP_002898425.1 YccF domain-containing protein -
  JMV82_RS16575 yccS 3356251..3358386 (+) 2136 WP_002898422.1 YccS family putative transporter -
  JMV82_RS16580 sxy/tfoX 3358400..3358996 (-) 597 WP_004150836.1 TfoX/Sxy family DNA transformation protein Regulator
  JMV82_RS16585 sulA 3359345..3359854 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  JMV82_RS16590 ompA 3360207..3361277 (+) 1071 WP_002898408.1 porin OmpA -
  JMV82_RS16595 matP 3361409..3361861 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  JMV82_RS16600 - 3362047..3363804 (+) 1758 WP_004147851.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22576.15 Da        Isoelectric Point: 10.1298

>NTDB_id=1134101 JMV82_RS16580 WP_004150836.1 3358400..3358996(-) (sxy/tfoX) [Klebsiella pneumoniae strain INF018 isolate INF018]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1134101 JMV82_RS16580 WP_004150836.1 3358400..3358996(-) (sxy/tfoX) [Klebsiella pneumoniae strain INF018 isolate INF018]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCGGGCCGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3GL50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment