Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JMW16_RS06610 Genome accession   NZ_LR890466
Coordinates   1327614..1328243 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain MSB1_7A isolate MSB1_7A     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1322614..1333243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMW16_RS06595 helD 1322856..1324910 (-) 2055 WP_021561301.1 DNA helicase IV -
  JMW16_RS06600 yccF 1325033..1325479 (+) 447 WP_001261235.1 YccF domain-containing protein -
  JMW16_RS06605 yccS 1325489..1327651 (+) 2163 WP_001550920.1 YccS family putative transporter -
  JMW16_RS06610 sxy/tfoX 1327614..1328243 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JMW16_RS06615 sulA 1328462..1328971 (+) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  JMW16_RS06620 ompA 1329328..1330380 (+) 1053 WP_000750418.1 porin OmpA -
  JMW16_RS06625 matP 1330455..1330907 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  JMW16_RS06630 ycbZ 1331093..1332853 (+) 1761 WP_000156479.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1134021 JMW16_RS06610 WP_000839153.1 1327614..1328243(-) (sxy/tfoX) [Escherichia coli strain MSB1_7A isolate MSB1_7A]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1134021 JMW16_RS06610 WP_000839153.1 1327614..1328243(-) (sxy/tfoX) [Escherichia coli strain MSB1_7A isolate MSB1_7A]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment