Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JMW80_RS16620 Genome accession   NZ_LR890446
Coordinates   3385733..3386329 (-) Length   198 a.a.
NCBI ID   WP_004150836.1    Uniprot ID   A0A0H3GL50
Organism   Klebsiella pneumoniae strain INF171 isolate INF171     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3380733..3391329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMW80_RS16605 helD 3380941..3382995 (-) 2055 WP_004176653.1 DNA helicase IV -
  JMW80_RS16610 - 3383120..3383566 (+) 447 WP_002898425.1 YccF domain-containing protein -
  JMW80_RS16615 yccS 3383584..3385719 (+) 2136 WP_002898422.1 YccS family putative transporter -
  JMW80_RS16620 sxy/tfoX 3385733..3386329 (-) 597 WP_004150836.1 TfoX/Sxy family DNA transformation protein Regulator
  JMW80_RS16625 sulA 3386678..3387187 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  JMW80_RS16630 ompA 3387540..3388610 (+) 1071 WP_002898408.1 porin OmpA -
  JMW80_RS16635 matP 3388742..3389194 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  JMW80_RS16640 - 3389380..3391137 (+) 1758 WP_032429922.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22576.15 Da        Isoelectric Point: 10.1298

>NTDB_id=1134008 JMW80_RS16620 WP_004150836.1 3385733..3386329(-) (sxy/tfoX) [Klebsiella pneumoniae strain INF171 isolate INF171]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1134008 JMW80_RS16620 WP_004150836.1 3385733..3386329(-) (sxy/tfoX) [Klebsiella pneumoniae strain INF171 isolate INF171]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCGGGCCGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3GL50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment