Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   MEPL_RS03360 Genome accession   NZ_CP006683
Coordinates   788406..790085 (+) Length   559 a.a.
NCBI ID   WP_013773666.1    Uniprot ID   F3Y9Q0
Organism   Melissococcus plutonius S1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 783406..795085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MEPL_RS03330 (MEPL_c006650) folD 783658..784509 (+) 852 WP_013773660.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  MEPL_RS03335 (MEPL_c006660) xseA 784516..785862 (+) 1347 WP_013773661.1 exodeoxyribonuclease VII large subunit -
  MEPL_RS03340 (MEPL_c006670) - 785866..786099 (+) 234 WP_013773662.1 exodeoxyribonuclease VII small subunit -
  MEPL_RS03345 (MEPL_c006680) - 786096..786986 (+) 891 WP_013773663.1 polyprenyl synthetase family protein -
  MEPL_RS03350 (MEPL_c006690) - 786999..787814 (+) 816 WP_013773664.1 TlyA family RNA methyltransferase -
  MEPL_RS03355 (MEPL_c006700) - 787931..788380 (+) 450 WP_013773665.1 arginine repressor -
  MEPL_RS03360 (MEPL_c006710) recN 788406..790085 (+) 1680 WP_013773666.1 DNA repair protein RecN Machinery gene
  MEPL_RS09085 (MEPL_c006720) - 790295..790405 (-) 111 WP_064483989.1 DUF4044 domain-containing protein -
  MEPL_RS03365 (MEPL_c006730) - 790478..791434 (-) 957 WP_048589736.1 magnesium transporter CorA family protein -
  MEPL_RS03370 (MEPL_c006740) - 791621..791992 (+) 372 WP_013773668.1 DUF3397 domain-containing protein -
  MEPL_RS03375 (MEPL_c006750) mraZ 792264..792695 (+) 432 WP_013773669.1 division/cell wall cluster transcriptional repressor MraZ -
  MEPL_RS03380 (MEPL_c006760) rsmH 792717..793667 (+) 951 WP_013773670.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  MEPL_RS03385 (MEPL_c006770) ftsL 793686..794084 (+) 399 WP_013773671.1 cell division protein FtsL -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 63429.68 Da        Isoelectric Point: 5.0349

>NTDB_id=113394 MEPL_RS03360 WP_013773666.1 788406..790085(+) (recN) [Melissococcus plutonius S1]
MLQELSIKNFAIISFLQLEFQSGMTVLTGETGAGKSIIIDAMALLVGGRGSSDYIRQGTSKCTLEGLFKMPKNLELIHLL
EGLGIEIEEDSLLIQRDISNTGKNVCRINGRIVTLSNLRRIGEYLVDIHGQNEHQELMQSDKHIEMLDEFGGKELEQIKK
QYKELYKEYRLLEKKVKNHQKNEKEFAQRMDMLQFQQKEIASAKLVVNEEQQLLEEKNKLANFQKIADTFSISYEAINGE
DSSLDKIGLAMNELTTIETLDPAYKTIAETVQNSYYLLQEASGDIAHLMDNLELNEERLNEVENRLELMRQLKRKYGDSI
EAVLAYYEEITHELEEVGLLEGREDQLETALNEKQAKTIEKGLELRKIRKEVAKKLGKSILKELKELYMEHSEFSVHFTP
LSPNKLSDAGLDFIEFYITTNPGEPLKPLVKVASGGELSRVMLALKTIFSKSQGITSIVFDEVDTGVSGRVAQAIADKIY
QISKNSQVLCITHLPQVAAVADYQYFIEKNIIDERTETIVRVLKSNQRVTEIARMLSGSEITTLTLKHAQELLNMANKN

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=113394 MEPL_RS03360 WP_013773666.1 788406..790085(+) (recN) [Melissococcus plutonius S1]
ATGTTGCAGGAACTTTCTATCAAGAATTTTGCAATTATTTCTTTTCTACAATTGGAATTTCAATCTGGCATGACCGTCTT
GACTGGTGAAACGGGTGCAGGTAAGTCTATCATCATCGATGCTATGGCTTTATTGGTAGGTGGAAGAGGTTCTAGTGATT
ATATTAGGCAGGGAACGTCAAAATGTACGTTAGAAGGATTGTTCAAGATGCCTAAGAATTTGGAATTAATCCATTTATTA
GAAGGATTAGGAATTGAAATTGAAGAAGATTCCCTACTCATTCAAAGAGATATTTCCAATACTGGCAAAAATGTTTGTCG
TATCAATGGACGAATTGTTACTCTTTCTAATCTACGCAGAATTGGTGAATATTTGGTAGATATTCATGGCCAAAACGAGC
ACCAAGAATTAATGCAAAGTGATAAGCATATAGAAATGCTAGATGAATTTGGTGGTAAGGAATTAGAGCAAATTAAAAAG
CAATATAAAGAATTATACAAAGAATATCGCTTGTTAGAAAAAAAGGTAAAAAATCATCAGAAAAATGAAAAAGAATTTGC
ACAACGAATGGACATGTTGCAATTTCAACAAAAAGAAATTGCCTCAGCAAAATTGGTTGTTAATGAAGAACAACAATTGT
TGGAAGAAAAGAACAAATTAGCCAATTTTCAAAAAATAGCTGATACATTTTCTATTAGTTATGAAGCTATTAATGGTGAA
GACAGTAGTTTAGATAAAATTGGATTAGCAATGAATGAATTAACAACAATTGAAACACTAGATCCAGCTTATAAAACAAT
CGCCGAAACAGTACAAAATAGTTATTATCTTCTCCAGGAAGCTAGTGGGGACATTGCTCATTTGATGGATAATTTAGAAT
TAAATGAAGAACGTTTAAATGAAGTAGAAAATAGACTTGAATTGATGCGACAATTAAAGCGAAAATATGGTGACTCTATT
GAAGCAGTATTAGCTTATTATGAAGAGATTACTCATGAATTGGAAGAAGTAGGTCTACTAGAAGGTAGAGAAGATCAATT
GGAAACTGCGTTAAATGAAAAACAGGCTAAGACAATCGAAAAAGGATTGGAACTACGTAAAATTCGCAAAGAAGTAGCTA
AAAAATTAGGAAAAAGTATTTTAAAAGAGCTAAAAGAACTCTATATGGAACATTCAGAATTTAGTGTACATTTCACACCA
CTCTCACCAAATAAATTATCTGATGCTGGTTTAGATTTTATTGAATTTTATATTACAACAAATCCTGGTGAACCGTTGAA
ACCCCTAGTAAAGGTAGCTTCTGGAGGTGAATTATCTCGTGTCATGCTGGCATTAAAAACAATTTTTTCAAAATCACAAG
GAATAACCAGTATTGTCTTTGATGAAGTGGATACAGGTGTGAGCGGACGTGTTGCACAAGCAATTGCAGATAAAATTTAT
CAAATTTCAAAAAATTCACAGGTCTTATGCATTACACATCTACCACAAGTCGCAGCTGTAGCAGACTATCAATATTTTAT
TGAAAAAAATATTATAGATGAAAGAACCGAAACGATAGTTAGGGTTTTGAAAAGTAATCAACGTGTGACTGAAATTGCCC
GTATGCTTTCTGGTAGCGAAATTACTACCTTAACTTTAAAGCATGCACAAGAATTATTAAATATGGCTAACAAAAATTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F3Y9Q0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.606

100

0.499

Multiple sequence alignment