Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JMW04_RS21595 Genome accession   NZ_LR890410
Coordinates   4562754..4563383 (+) Length   209 a.a.
NCBI ID   WP_000839136.1    Uniprot ID   A0A0D8W3X3
Organism   Escherichia coli strain MSB2_1A isolate MSB2_1A     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4557754..4568383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMW04_RS21575 ycbZ 4558154..4559914 (-) 1761 WP_000156498.1 Lon protease family protein -
  JMW04_RS21580 matP 4560100..4560552 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  JMW04_RS21585 ompA 4560630..4561670 (-) 1041 WP_001313715.1 porin OmpA -
  JMW04_RS21590 sulA 4562026..4562535 (-) 510 WP_000288723.1 SOS-induced cell division inhibitor SulA -
  JMW04_RS21595 sxy/tfoX 4562754..4563383 (+) 630 WP_000839136.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JMW04_RS21600 yccS 4563346..4565508 (-) 2163 WP_201513146.1 YccS family putative transporter -
  JMW04_RS21605 yccF 4565518..4565964 (-) 447 WP_001261236.1 YccF domain-containing protein -
  JMW04_RS21610 helD 4566087..4568141 (+) 2055 WP_001538528.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.06 Da        Isoelectric Point: 9.2180

>NTDB_id=1133920 JMW04_RS21595 WP_000839136.1 4562754..4563383(+) (sxy/tfoX) [Escherichia coli strain MSB2_1A isolate MSB2_1A]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1133920 JMW04_RS21595 WP_000839136.1 4562754..4563383(+) (sxy/tfoX) [Escherichia coli strain MSB2_1A isolate MSB2_1A]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTAACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D8W3X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99

Multiple sequence alignment