Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | NI25_RS17085 | Genome accession | NZ_CP009754 |
| Coordinates | 3902204..3904732 (-) | Length | 842 a.a. |
| NCBI ID | WP_061443276.1 | Uniprot ID | - |
| Organism | Streptomyces sp. CCM_MD2014 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 3897204..3909732
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NI25_RS17075 (NI25_16985) | - | 3898360..3899007 (+) | 648 | WP_061443274.1 | HAD family acid phosphatase | - |
| NI25_RS17080 (NI25_16990) | - | 3899068..3902130 (+) | 3063 | WP_061443275.1 | NACHT domain-containing protein | - |
| NI25_RS17085 (NI25_16995) | clpC | 3902204..3904732 (-) | 2529 | WP_061443276.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| NI25_RS17090 (NI25_17000) | - | 3905174..3905935 (+) | 762 | WP_061443277.1 | SCO3374 family protein | - |
| NI25_RS17095 (NI25_17005) | - | 3905936..3906271 (-) | 336 | WP_030404797.1 | histone-like nucleoid-structuring protein Lsr2 | - |
| NI25_RS17100 (NI25_17010) | - | 3906524..3907033 (-) | 510 | WP_061443278.1 | amino-acid N-acetyltransferase | - |
| NI25_RS17105 (NI25_17015) | - | 3907043..3907519 (-) | 477 | WP_061443279.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| NI25_RS17110 (NI25_17020) | - | 3907679..3907858 (-) | 180 | WP_061443280.1 | hypothetical protein | - |
| NI25_RS17115 (NI25_17025) | - | 3907882..3908520 (-) | 639 | WP_107071754.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 842 a.a. Molecular weight: 93084.25 Da Isoelectric Point: 5.8414
>NTDB_id=113391 NI25_RS17085 WP_061443276.1 3902204..3904732(-) (clpC) [Streptomyces sp. CCM_MD2014]
MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVRQQVEEIIGQGQQAPSGHIPF
TPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYQGKETATAGGPAEGT
PSTSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVKGEVPETLKD
KHLYTLDLGALVAGSRYRGDFEERLKKVLKEIRTRGDIILFIDELHTLVGAGAAEGAIDAASILKPMLARGELQTIGATT
LDEYRKHLEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYISDRFLPDKAIDLID
EAGSRMRIRRMTAPPDLREFDEKIAGVRRDKESAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGELI
AEVLATATGIPVFKLTEEESSRLLRMEDELHKRVIGQVDAVKALSKAIRRTRAGLKDPKRPGGSFIFAGPSGVGKTELSK
ALAEFLFGDEDALISLDMSEFSEKHTVSRLFGSPPGYVGYEEGGQLTEKVRRKPFSVVLFDEVEKAHPDIFNSLLQILED
GRLTDSQGRVVDFKNTVIIMTTNLGTRDISKGFNLGFAAAGDTKTNYERMKNKVQDELKQHFRPEFLNRVDDVVVFPQLS
QDDILRIVDLMIDKVDERLKDRDMGIELSQSAKELLSKKGYDPVLGARPLRRTIQREVEDTLSEKILFGELRPGHIVVVD
TEGEGDAKTFTFRGEEKSALPDVPPIEQAAGGGAGPNLSKEA
MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVRQQVEEIIGQGQQAPSGHIPF
TPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYQGKETATAGGPAEGT
PSTSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVKGEVPETLKD
KHLYTLDLGALVAGSRYRGDFEERLKKVLKEIRTRGDIILFIDELHTLVGAGAAEGAIDAASILKPMLARGELQTIGATT
LDEYRKHLEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYISDRFLPDKAIDLID
EAGSRMRIRRMTAPPDLREFDEKIAGVRRDKESAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGELI
AEVLATATGIPVFKLTEEESSRLLRMEDELHKRVIGQVDAVKALSKAIRRTRAGLKDPKRPGGSFIFAGPSGVGKTELSK
ALAEFLFGDEDALISLDMSEFSEKHTVSRLFGSPPGYVGYEEGGQLTEKVRRKPFSVVLFDEVEKAHPDIFNSLLQILED
GRLTDSQGRVVDFKNTVIIMTTNLGTRDISKGFNLGFAAAGDTKTNYERMKNKVQDELKQHFRPEFLNRVDDVVVFPQLS
QDDILRIVDLMIDKVDERLKDRDMGIELSQSAKELLSKKGYDPVLGARPLRRTIQREVEDTLSEKILFGELRPGHIVVVD
TEGEGDAKTFTFRGEEKSALPDVPPIEQAAGGGAGPNLSKEA
Nucleotide
Download Length: 2529 bp
>NTDB_id=113391 NI25_RS17085 WP_061443276.1 3902204..3904732(-) (clpC) [Streptomyces sp. CCM_MD2014]
ATGTTCGAGAGGTTCACCGACCGCGCGCGGCGGGTTGTCGTCCTGGCTCAGGAAGAAGCCCGGATGCTCAACCACAACTA
CATCGGCACCGAGCACATCCTCCTGGGCCTGATCCACGAGGGTGAGGGTGTCGCCGCCAAGGCCCTTGAGAGCCTCGGGA
TTTCGCTCGAGGCGGTCCGCCAGCAGGTGGAGGAGATCATCGGCCAGGGCCAGCAGGCCCCGTCCGGCCACATCCCCTTC
ACCCCCCGTGCCAAGAAGGTCCTGGAGCTGTCGCTCCGCGAGGCCCTCCAGCTGGGTCACAACTACATCGGCACGGAGCA
CATCCTGCTCGGCCTGATCCGCGAGGGCGAGGGCGTCGCCGCCCAGGTCCTGGTCAAGCTGGGCGCCGATCTCAACCGGG
TGCGGCAGCAGGTCATCCAGCTGCTCTCCGGCTACCAGGGCAAGGAGACCGCCACCGCCGGCGGTCCTGCGGAGGGCACG
CCTTCCACGTCCCTGGTCCTCGACCAGTTCGGCCGGAACCTCACCCAGGCCGCTCGTGAGTCCAAGCTCGACCCGGTCAT
CGGGCGCGAGAAGGAGATCGAGCGGGTCATGCAGGTGCTGTCCCGCCGTACGAAGAACAACCCGGTGCTCATCGGTGAGC
CCGGCGTCGGCAAGACCGCCGTCGTCGAGGGCCTCGCGCAGGCCATCGTCAAGGGCGAGGTGCCCGAGACCCTCAAGGAC
AAGCACCTCTACACCCTGGACCTCGGCGCCCTGGTCGCCGGCTCCCGTTACCGCGGTGACTTCGAGGAGCGCCTGAAGAA
GGTGCTCAAGGAGATCCGCACCCGCGGCGACATCATCCTGTTCATCGACGAGCTGCACACGCTGGTCGGTGCGGGTGCCG
CCGAGGGCGCCATCGACGCCGCGAGCATCCTCAAGCCGATGCTGGCCCGTGGTGAGCTGCAGACCATCGGTGCGACCACG
CTGGACGAGTACCGCAAGCACCTGGAGAAGGACGCGGCCCTCGAGCGCCGCTTCCAGCCCATCCAGGTCGCGGAGCCGTC
GCTGCCGCACACGATCGAGATCCTCAAGGGGCTGCGCGACCGGTACGAGGCGCACCACCGCGTCTCCATCACGGACGAGG
CCCTGGTCCAGGCGGCGACGCTCGCCGACCGCTACATCTCGGACCGCTTCCTGCCGGACAAGGCGATCGACCTGATCGAC
GAGGCCGGTTCCCGGATGCGCATCCGCCGGATGACCGCGCCGCCGGACCTCCGCGAGTTCGACGAGAAGATCGCCGGCGT
CCGGCGCGACAAGGAGTCCGCGATCGACTCGCAGGACTTCGAGAAGGCCGCCTCCCTGCGCGACAAGGAGAAGCAGCTCC
TGGCCGCCAAGGCCAAGCGCGAGAAGGAGTGGAAGGCCGGCGACATGGACGTCGTCGCCGAGGTCGACGGCGAGCTGATC
GCCGAGGTCCTCGCGACCGCCACCGGCATCCCGGTCTTCAAGCTCACGGAGGAGGAGTCGTCCCGCCTGCTGCGCATGGA
GGACGAGCTCCACAAGCGGGTCATCGGGCAGGTCGACGCCGTCAAGGCGCTGTCCAAGGCGATCCGCCGCACCCGTGCCG
GCCTGAAGGACCCGAAGCGTCCGGGTGGCTCGTTCATCTTCGCCGGTCCGTCCGGTGTCGGTAAGACCGAGCTGTCCAAG
GCGCTCGCCGAGTTCCTCTTCGGCGACGAGGACGCGCTGATCTCCCTCGACATGTCGGAGTTCAGCGAGAAGCACACGGT
CTCGCGCCTCTTCGGTTCGCCCCCCGGCTACGTGGGCTACGAGGAGGGCGGCCAGCTGACGGAGAAGGTCCGCCGCAAGC
CGTTCTCGGTCGTCCTCTTCGACGAGGTCGAGAAGGCCCACCCGGACATTTTCAACTCCCTGCTGCAGATCCTGGAGGAC
GGTCGCCTGACCGACTCCCAGGGCCGGGTCGTGGACTTCAAGAACACGGTCATCATCATGACGACCAACCTCGGCACCCG
GGACATCTCCAAGGGCTTCAACCTCGGCTTCGCCGCCGCGGGTGACACGAAGACCAACTACGAGCGCATGAAGAACAAGG
TCCAGGACGAGCTCAAGCAGCACTTCCGGCCCGAGTTCCTCAACCGTGTCGACGACGTGGTCGTCTTCCCGCAGCTCAGC
CAGGACGACATCCTGCGGATCGTCGACCTGATGATCGACAAGGTGGACGAGCGCCTCAAGGACCGGGACATGGGCATCGA
GCTCTCCCAGTCCGCCAAGGAGCTGCTGTCCAAGAAGGGCTACGACCCGGTGCTGGGCGCGCGTCCGCTGCGCCGCACGA
TCCAGCGCGAGGTCGAGGACACGCTGTCGGAGAAGATCCTCTTCGGCGAGCTGCGTCCCGGCCACATCGTCGTCGTGGAC
ACCGAGGGCGAGGGCGACGCCAAGACCTTCACCTTCCGGGGTGAGGAGAAGTCGGCCCTCCCCGACGTCCCGCCGATCGA
GCAGGCGGCCGGTGGCGGCGCGGGTCCGAACCTGAGCAAGGAGGCGTAG
ATGTTCGAGAGGTTCACCGACCGCGCGCGGCGGGTTGTCGTCCTGGCTCAGGAAGAAGCCCGGATGCTCAACCACAACTA
CATCGGCACCGAGCACATCCTCCTGGGCCTGATCCACGAGGGTGAGGGTGTCGCCGCCAAGGCCCTTGAGAGCCTCGGGA
TTTCGCTCGAGGCGGTCCGCCAGCAGGTGGAGGAGATCATCGGCCAGGGCCAGCAGGCCCCGTCCGGCCACATCCCCTTC
ACCCCCCGTGCCAAGAAGGTCCTGGAGCTGTCGCTCCGCGAGGCCCTCCAGCTGGGTCACAACTACATCGGCACGGAGCA
CATCCTGCTCGGCCTGATCCGCGAGGGCGAGGGCGTCGCCGCCCAGGTCCTGGTCAAGCTGGGCGCCGATCTCAACCGGG
TGCGGCAGCAGGTCATCCAGCTGCTCTCCGGCTACCAGGGCAAGGAGACCGCCACCGCCGGCGGTCCTGCGGAGGGCACG
CCTTCCACGTCCCTGGTCCTCGACCAGTTCGGCCGGAACCTCACCCAGGCCGCTCGTGAGTCCAAGCTCGACCCGGTCAT
CGGGCGCGAGAAGGAGATCGAGCGGGTCATGCAGGTGCTGTCCCGCCGTACGAAGAACAACCCGGTGCTCATCGGTGAGC
CCGGCGTCGGCAAGACCGCCGTCGTCGAGGGCCTCGCGCAGGCCATCGTCAAGGGCGAGGTGCCCGAGACCCTCAAGGAC
AAGCACCTCTACACCCTGGACCTCGGCGCCCTGGTCGCCGGCTCCCGTTACCGCGGTGACTTCGAGGAGCGCCTGAAGAA
GGTGCTCAAGGAGATCCGCACCCGCGGCGACATCATCCTGTTCATCGACGAGCTGCACACGCTGGTCGGTGCGGGTGCCG
CCGAGGGCGCCATCGACGCCGCGAGCATCCTCAAGCCGATGCTGGCCCGTGGTGAGCTGCAGACCATCGGTGCGACCACG
CTGGACGAGTACCGCAAGCACCTGGAGAAGGACGCGGCCCTCGAGCGCCGCTTCCAGCCCATCCAGGTCGCGGAGCCGTC
GCTGCCGCACACGATCGAGATCCTCAAGGGGCTGCGCGACCGGTACGAGGCGCACCACCGCGTCTCCATCACGGACGAGG
CCCTGGTCCAGGCGGCGACGCTCGCCGACCGCTACATCTCGGACCGCTTCCTGCCGGACAAGGCGATCGACCTGATCGAC
GAGGCCGGTTCCCGGATGCGCATCCGCCGGATGACCGCGCCGCCGGACCTCCGCGAGTTCGACGAGAAGATCGCCGGCGT
CCGGCGCGACAAGGAGTCCGCGATCGACTCGCAGGACTTCGAGAAGGCCGCCTCCCTGCGCGACAAGGAGAAGCAGCTCC
TGGCCGCCAAGGCCAAGCGCGAGAAGGAGTGGAAGGCCGGCGACATGGACGTCGTCGCCGAGGTCGACGGCGAGCTGATC
GCCGAGGTCCTCGCGACCGCCACCGGCATCCCGGTCTTCAAGCTCACGGAGGAGGAGTCGTCCCGCCTGCTGCGCATGGA
GGACGAGCTCCACAAGCGGGTCATCGGGCAGGTCGACGCCGTCAAGGCGCTGTCCAAGGCGATCCGCCGCACCCGTGCCG
GCCTGAAGGACCCGAAGCGTCCGGGTGGCTCGTTCATCTTCGCCGGTCCGTCCGGTGTCGGTAAGACCGAGCTGTCCAAG
GCGCTCGCCGAGTTCCTCTTCGGCGACGAGGACGCGCTGATCTCCCTCGACATGTCGGAGTTCAGCGAGAAGCACACGGT
CTCGCGCCTCTTCGGTTCGCCCCCCGGCTACGTGGGCTACGAGGAGGGCGGCCAGCTGACGGAGAAGGTCCGCCGCAAGC
CGTTCTCGGTCGTCCTCTTCGACGAGGTCGAGAAGGCCCACCCGGACATTTTCAACTCCCTGCTGCAGATCCTGGAGGAC
GGTCGCCTGACCGACTCCCAGGGCCGGGTCGTGGACTTCAAGAACACGGTCATCATCATGACGACCAACCTCGGCACCCG
GGACATCTCCAAGGGCTTCAACCTCGGCTTCGCCGCCGCGGGTGACACGAAGACCAACTACGAGCGCATGAAGAACAAGG
TCCAGGACGAGCTCAAGCAGCACTTCCGGCCCGAGTTCCTCAACCGTGTCGACGACGTGGTCGTCTTCCCGCAGCTCAGC
CAGGACGACATCCTGCGGATCGTCGACCTGATGATCGACAAGGTGGACGAGCGCCTCAAGGACCGGGACATGGGCATCGA
GCTCTCCCAGTCCGCCAAGGAGCTGCTGTCCAAGAAGGGCTACGACCCGGTGCTGGGCGCGCGTCCGCTGCGCCGCACGA
TCCAGCGCGAGGTCGAGGACACGCTGTCGGAGAAGATCCTCTTCGGCGAGCTGCGTCCCGGCCACATCGTCGTCGTGGAC
ACCGAGGGCGAGGGCGACGCCAAGACCTTCACCTTCCGGGGTGAGGAGAAGTCGGCCCTCCCCGACGTCCCGCCGATCGA
GCAGGCGGCCGGTGGCGGCGCGGGTCCGAACCTGAGCAAGGAGGCGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
61.605 |
96.2 |
0.593 |
| clpC | Streptococcus mutans UA159 |
44.337 |
98.575 |
0.437 |
| clpC | Streptococcus thermophilus LMD-9 |
43.027 |
99.644 |
0.429 |
| clpC | Streptococcus thermophilus LMG 18311 |
42.857 |
99.762 |
0.428 |
| clpC | Streptococcus pneumoniae Rx1 |
44.583 |
95.368 |
0.425 |
| clpC | Streptococcus pneumoniae D39 |
44.583 |
95.368 |
0.425 |
| clpC | Streptococcus pneumoniae TIGR4 |
44.612 |
94.774 |
0.423 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
43.951 |
96.2 |
0.423 |
| clpE | Streptococcus mutans UA159 |
54.473 |
74.347 |
0.405 |
| clpE | Streptococcus pneumoniae TIGR4 |
53.291 |
73.99 |
0.394 |
| clpE | Streptococcus pneumoniae R6 |
53.13 |
73.99 |
0.393 |
| clpE | Streptococcus pneumoniae D39 |
53.13 |
73.99 |
0.393 |
| clpE | Streptococcus pneumoniae Rx1 |
53.13 |
73.99 |
0.393 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
53.065 |
73.634 |
0.391 |