Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JMW09_RS15395 Genome accession   NZ_LR890405
Coordinates   3170564..3171193 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain MSB1_7C isolate MSB1_7C     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3165564..3176193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMW09_RS15380 helD 3165806..3167860 (-) 2055 WP_001305911.1 DNA helicase IV -
  JMW09_RS15385 yccF 3167983..3168429 (+) 447 WP_001261235.1 YccF domain-containing protein -
  JMW09_RS15390 yccS 3168439..3170601 (+) 2163 WP_000875041.1 YccS family putative transporter -
  JMW09_RS15395 sxy/tfoX 3170564..3171193 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JMW09_RS15400 sulA 3171412..3171921 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  JMW09_RS15405 ompA 3172277..3173317 (+) 1041 WP_001309394.1 porin OmpA -
  JMW09_RS15410 matP 3173393..3173845 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  JMW09_RS15415 ycbZ 3174031..3175791 (+) 1761 WP_000156482.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1133889 JMW09_RS15395 WP_000839153.1 3170564..3171193(-) (sxy/tfoX) [Escherichia coli strain MSB1_7C isolate MSB1_7C]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1133889 JMW09_RS15395 WP_000839153.1 3170564..3171193(-) (sxy/tfoX) [Escherichia coli strain MSB1_7C isolate MSB1_7C]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment