Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JMW68_RS16530 Genome accession   NZ_LR890391
Coordinates   3355540..3356136 (-) Length   198 a.a.
NCBI ID   WP_004150836.1    Uniprot ID   A0A0H3GL50
Organism   Klebsiella pneumoniae strain KSB2_2C isolate KSB2_2C     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3350540..3361136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMW68_RS16515 helD 3350748..3352802 (-) 2055 WP_040147912.1 DNA helicase IV -
  JMW68_RS16520 - 3352927..3353373 (+) 447 WP_002898425.1 YccF domain-containing protein -
  JMW68_RS16525 yccS 3353391..3355526 (+) 2136 WP_002898422.1 YccS family putative transporter -
  JMW68_RS16530 sxy/tfoX 3355540..3356136 (-) 597 WP_004150836.1 TfoX/Sxy family DNA transformation protein Regulator
  JMW68_RS16535 sulA 3356485..3356994 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  JMW68_RS16540 ompA 3357347..3358417 (+) 1071 WP_002898408.1 porin OmpA -
  JMW68_RS16545 matP 3358549..3359001 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  JMW68_RS16550 - 3359187..3360944 (+) 1758 WP_004147851.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22576.15 Da        Isoelectric Point: 10.1298

>NTDB_id=1133844 JMW68_RS16530 WP_004150836.1 3355540..3356136(-) (sxy/tfoX) [Klebsiella pneumoniae strain KSB2_2C isolate KSB2_2C]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1133844 JMW68_RS16530 WP_004150836.1 3355540..3356136(-) (sxy/tfoX) [Klebsiella pneumoniae strain KSB2_2C isolate KSB2_2C]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCGGGCCGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3GL50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment