Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JMW24_RS16520 Genome accession   NZ_LR890384
Coordinates   3355000..3355596 (-) Length   198 a.a.
NCBI ID   WP_004150836.1    Uniprot ID   A0A0H3GL50
Organism   Klebsiella pneumoniae isolate INF333     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3350000..3360596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMW24_RS16505 helD 3350208..3352262 (-) 2055 WP_040147912.1 DNA helicase IV -
  JMW24_RS16510 - 3352387..3352833 (+) 447 WP_002898425.1 YccF domain-containing protein -
  JMW24_RS16515 yccS 3352851..3354986 (+) 2136 WP_002898422.1 YccS family putative transporter -
  JMW24_RS16520 sxy/tfoX 3355000..3355596 (-) 597 WP_004150836.1 TfoX/Sxy family DNA transformation protein Regulator
  JMW24_RS16525 sulA 3355945..3356454 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  JMW24_RS16530 ompA 3356807..3357877 (+) 1071 WP_002898408.1 porin OmpA -
  JMW24_RS16535 matP 3358009..3358461 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  JMW24_RS16540 - 3358647..3360404 (+) 1758 WP_004147851.1 AAA family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22576.15 Da        Isoelectric Point: 10.1298

>NTDB_id=1133820 JMW24_RS16520 WP_004150836.1 3355000..3355596(-) (sxy/tfoX) [Klebsiella pneumoniae isolate INF333]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1133820 JMW24_RS16520 WP_004150836.1 3355000..3355596(-) (sxy/tfoX) [Klebsiella pneumoniae isolate INF333]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCGGGCCGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3GL50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment