Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JMV72_RS16530 Genome accession   NZ_LR890381
Coordinates   3355506..3356102 (-) Length   198 a.a.
NCBI ID   WP_004150836.1    Uniprot ID   A0A0H3GL50
Organism   Klebsiella pneumoniae strain INF148 isolate INF148     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3350506..3361102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMV72_RS16515 helD 3350714..3352768 (-) 2055 WP_040147912.1 DNA helicase IV -
  JMV72_RS16520 - 3352893..3353339 (+) 447 WP_002898425.1 YccF domain-containing protein -
  JMV72_RS16525 yccS 3353357..3355492 (+) 2136 WP_002898422.1 YccS family putative transporter -
  JMV72_RS16530 sxy/tfoX 3355506..3356102 (-) 597 WP_004150836.1 TfoX/Sxy family DNA transformation protein Regulator
  JMV72_RS16535 sulA 3356451..3356960 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  JMV72_RS16540 ompA 3357313..3358383 (+) 1071 WP_002898408.1 porin OmpA -
  JMV72_RS16545 matP 3358515..3358967 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  JMV72_RS16550 - 3359153..3360910 (+) 1758 WP_004147851.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22576.15 Da        Isoelectric Point: 10.1298

>NTDB_id=1133796 JMV72_RS16530 WP_004150836.1 3355506..3356102(-) (sxy/tfoX) [Klebsiella pneumoniae strain INF148 isolate INF148]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1133796 JMV72_RS16530 WP_004150836.1 3355506..3356102(-) (sxy/tfoX) [Klebsiella pneumoniae strain INF148 isolate INF148]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCGGGCCGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3GL50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment