Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JMW41_RS16840 Genome accession   NZ_LR890369
Coordinates   3385377..3385973 (-) Length   198 a.a.
NCBI ID   WP_032429924.1    Uniprot ID   -
Organism   Klebsiella pneumoniae strain INF354 isolate INF354     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3380377..3390973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMW41_RS16825 helD 3380585..3382639 (-) 2055 WP_004176653.1 DNA helicase IV -
  JMW41_RS16830 - 3382764..3383210 (+) 447 WP_002898425.1 YccF domain-containing protein -
  JMW41_RS16835 yccS 3383228..3385363 (+) 2136 WP_002898422.1 YccS family putative transporter -
  JMW41_RS16840 sxy/tfoX 3385377..3385973 (-) 597 WP_032429924.1 TfoX/Sxy family DNA transformation protein Regulator
  JMW41_RS16845 sulA 3386322..3386831 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  JMW41_RS16850 ompA 3387184..3388254 (+) 1071 WP_002898408.1 porin OmpA -
  JMW41_RS16855 matP 3388386..3388838 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  JMW41_RS16860 - 3389024..3390781 (+) 1758 WP_032429922.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22590.18 Da        Isoelectric Point: 10.1298

>NTDB_id=1133747 JMW41_RS16840 WP_032429924.1 3385377..3385973(-) (sxy/tfoX) [Klebsiella pneumoniae strain INF354 isolate INF354]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAAVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1133747 JMW41_RS16840 WP_032429924.1 3385377..3385973(-) (sxy/tfoX) [Klebsiella pneumoniae strain INF354 isolate INF354]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCGGGCCGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGCGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.761

99.495

0.505

Multiple sequence alignment