Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JMW75_RS15935 Genome accession   NZ_LR890360
Coordinates   3236049..3236645 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain INF049 isolate INF049     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3231049..3241645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMW75_RS15920 helD 3231257..3233311 (-) 2055 WP_023342915.1 DNA helicase IV -
  JMW75_RS15925 - 3233436..3233882 (+) 447 WP_021312905.1 YccF domain-containing protein -
  JMW75_RS15930 yccS 3233900..3236035 (+) 2136 WP_002898422.1 YccS family putative transporter -
  JMW75_RS15935 sxy/tfoX 3236049..3236645 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  JMW75_RS15940 sulA 3236994..3237503 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  JMW75_RS28125 - 3237625..3237807 (-) 183 WP_353055180.1 hypothetical protein -
  JMW75_RS15945 - 3237789..3238769 (-) 981 WP_000019445.1 IS5-like element ISKpn26 family transposase -
  JMW75_RS15950 ompA 3239056..3240126 (+) 1071 WP_032737546.1 porin OmpA -
  JMW75_RS15955 matP 3240257..3240709 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=1133722 JMW75_RS15935 WP_004179217.1 3236049..3236645(-) (sxy/tfoX) [Klebsiella pneumoniae strain INF049 isolate INF049]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1133722 JMW75_RS15935 WP_004179217.1 3236049..3236645(-) (sxy/tfoX) [Klebsiella pneumoniae strain INF049 isolate INF049]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment