Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JMW03_RS15495 Genome accession   NZ_LR890349
Coordinates   3150268..3150897 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain MSB1_9D isolate MSB1_9D     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3145268..3155897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMW03_RS15480 helD 3145510..3147564 (-) 2055 WP_201514514.1 DNA helicase IV -
  JMW03_RS15485 yccF 3147687..3148133 (+) 447 WP_001261235.1 YccF domain-containing protein -
  JMW03_RS15490 yccS 3148143..3150305 (+) 2163 WP_201513854.1 YccS family putative transporter -
  JMW03_RS15495 sxy/tfoX 3150268..3150897 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JMW03_RS15500 sulA 3151116..3151625 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  JMW03_RS15505 ompA 3151982..3153022 (+) 1041 WP_000750416.1 porin OmpA -
  JMW03_RS15510 matP 3153098..3153550 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  JMW03_RS15515 ycbZ 3153736..3155496 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1133675 JMW03_RS15495 WP_000839153.1 3150268..3150897(-) (sxy/tfoX) [Escherichia coli strain MSB1_9D isolate MSB1_9D]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1133675 JMW03_RS15495 WP_000839153.1 3150268..3150897(-) (sxy/tfoX) [Escherichia coli strain MSB1_9D isolate MSB1_9D]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment