Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JMW06_RS10420 Genome accession   NZ_LR890343
Coordinates   2111517..2112113 (-) Length   198 a.a.
NCBI ID   WP_004150836.1    Uniprot ID   A0A0H3GL50
Organism   Klebsiella pneumoniae strain KSB2_2B isolate KSB2_2B     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2106517..2117113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMW06_RS10405 helD 2106725..2108779 (-) 2055 WP_040147912.1 DNA helicase IV -
  JMW06_RS10410 - 2108904..2109350 (+) 447 WP_002898425.1 YccF domain-containing protein -
  JMW06_RS10415 yccS 2109368..2111503 (+) 2136 WP_002898422.1 YccS family putative transporter -
  JMW06_RS10420 sxy/tfoX 2111517..2112113 (-) 597 WP_004150836.1 TfoX/Sxy family DNA transformation protein Regulator
  JMW06_RS10425 sulA 2112462..2112971 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  JMW06_RS10430 ompA 2113324..2114394 (+) 1071 WP_002898408.1 porin OmpA -
  JMW06_RS10435 matP 2114526..2114978 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  JMW06_RS10440 - 2115164..2116921 (+) 1758 WP_004147851.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22576.15 Da        Isoelectric Point: 10.1298

>NTDB_id=1133642 JMW06_RS10420 WP_004150836.1 2111517..2112113(-) (sxy/tfoX) [Klebsiella pneumoniae strain KSB2_2B isolate KSB2_2B]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1133642 JMW06_RS10420 WP_004150836.1 2111517..2112113(-) (sxy/tfoX) [Klebsiella pneumoniae strain KSB2_2B isolate KSB2_2B]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCGGGCCGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3GL50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment