Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JMW07_RS00465 Genome accession   NZ_LR890334
Coordinates   95994..96623 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain MINF_9A isolate MINF_9A     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 90994..101623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMW07_RS00445 ycbZ 91394..93154 (-) 1761 WP_000156473.1 Lon protease family protein -
  JMW07_RS00450 matP 93340..93792 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  JMW07_RS00455 ompA 93869..94909 (-) 1041 WP_022645481.1 porin OmpA -
  JMW07_RS00460 sulA 95266..95775 (-) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  JMW07_RS00465 sxy/tfoX 95994..96623 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JMW07_RS00470 yccS 96586..98748 (-) 2163 WP_000875041.1 YccS family putative transporter -
  JMW07_RS00475 yccF 98758..99204 (-) 447 WP_001261235.1 YccF domain-containing protein -
  JMW07_RS00480 helD 99327..101381 (+) 2055 WP_038431999.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1133616 JMW07_RS00465 WP_000839153.1 95994..96623(+) (sxy/tfoX) [Escherichia coli strain MINF_9A isolate MINF_9A]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1133616 JMW07_RS00465 WP_000839153.1 95994..96623(+) (sxy/tfoX) [Escherichia coli strain MINF_9A isolate MINF_9A]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTAGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment