Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JMV91_RS14685 Genome accession   NZ_LR890326
Coordinates   2963238..2963867 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain MINF_1A isolate MINF_1A     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2958238..2968867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMV91_RS14670 helD 2958480..2960534 (-) 2055 WP_012311774.1 DNA helicase IV -
  JMV91_RS14675 yccF 2960657..2961103 (+) 447 WP_001261235.1 YccF domain-containing protein -
  JMV91_RS14680 yccS 2961113..2963275 (+) 2163 WP_000875033.1 YccS family putative transporter -
  JMV91_RS14685 sxy/tfoX 2963238..2963867 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JMV91_RS14690 sulA 2964086..2964595 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  JMV91_RS14695 ompA 2964951..2966003 (+) 1053 WP_024175778.1 porin OmpA -
  JMV91_RS14700 matP 2966079..2966531 (-) 453 WP_000877166.1 macrodomain Ter protein MatP -
  JMV91_RS14705 ycbZ 2966717..2968477 (+) 1761 WP_000156473.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1133601 JMV91_RS14685 WP_000839153.1 2963238..2963867(-) (sxy/tfoX) [Escherichia coli strain MINF_1A isolate MINF_1A]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1133601 JMV91_RS14685 WP_000839153.1 2963238..2963867(-) (sxy/tfoX) [Escherichia coli strain MINF_1A isolate MINF_1A]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACTGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCTCG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment