Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | NI25_RS06320 | Genome accession | NZ_CP009754 |
| Coordinates | 1467653..1470181 (+) | Length | 842 a.a. |
| NCBI ID | WP_061441509.1 | Uniprot ID | - |
| Organism | Streptomyces sp. CCM_MD2014 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1462653..1475181
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NI25_RS06300 (NI25_06260) | - | 1464087..1465370 (-) | 1284 | WP_061441505.1 | aspartate aminotransferase family protein | - |
| NI25_RS06305 (NI25_06265) | - | 1465367..1466209 (-) | 843 | WP_061441506.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| NI25_RS06310 (NI25_06270) | - | 1466366..1466617 (-) | 252 | WP_061441507.1 | helix-turn-helix domain-containing protein | - |
| NI25_RS06315 (NI25_06275) | map | 1466681..1467457 (+) | 777 | WP_061441508.1 | type I methionyl aminopeptidase | - |
| NI25_RS06320 (NI25_06280) | clpC | 1467653..1470181 (+) | 2529 | WP_061441509.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| NI25_RS06325 (NI25_06285) | ggt | 1470182..1471990 (-) | 1809 | WP_061441510.1 | gamma-glutamyltransferase | - |
| NI25_RS06330 (NI25_06290) | - | 1472133..1472891 (+) | 759 | WP_061441511.1 | hypothetical protein | - |
| NI25_RS06335 (NI25_06295) | - | 1473481..1474236 (-) | 756 | WP_061441512.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| NI25_RS06340 (NI25_06300) | - | 1474373..1474846 (+) | 474 | WP_061441513.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
Sequence
Protein
Download Length: 842 a.a. Molecular weight: 92147.29 Da Isoelectric Point: 4.9110
>NTDB_id=113360 NI25_RS06320 WP_061441509.1 1467653..1470181(+) (clpC) [Streptomyces sp. CCM_MD2014]
MTSGYMGPEGDPFAEFLARFFGGPRPRQIDIGRLLSQPARELVRGAAQYAAEHGSRDLDTEHLLRAALSTEPTRGLLSRA
GADPDSLASQIDERTGPVQHPPGEVPPPTSLSLTPAVKRALLDAHELARSTGTGYIGPEHVLSALAANPDSAAGHILNAA
RFAPSNVPTDSPEAAKARTESTRATNTPTLDKYGRDLTDLAQQGRIDPVIGREEEIEQTVEVLSRRGKNNPVLIGDAGVG
KTAVVEGLAQRITDGDVPDVLAGRRVVALDLTGVVAGTRYRGDFEERMNNIVGEIRAHSDQLIIFIDELHTVVGAGGGGE
GGSMDAGNILKPALARGELHIVGATTLEEYRRIEKDAALARRFQPILVPEPTTADAIEILRGLRDRYEAHHQVRYTDEAL
VAAVEMSDRYLTDRRLPDKAIDLIDQAGARVRLRSRTKGTDVRALEREVDQLVRDKDQAVADEQYEQATQLRDRIVELKQ
RISEATGDGQADEGLDLVVDTESIAEVVSRQTGIPVSSLTQEEKDRLLGLESHLHERVVGQDEAVRVVSDAVLRSRAGLS
SPDRPIGSFLFLGPTGVGKTELARALAEALFGSEDRMVRLDMSEYQERHTVSRLVGAPPGYVGHEEAGQLTEVVRRHPYS
LLLLDEVEKAHPDVFNILLQVLDDGRLTDSQGRTVDFSNTVVVMTSNLGSDVITRRGAGIGFGSGGAEADEEARREQVLR
PLREHFRPEFLNRVDEIVVFRQLSGEQLRQITSLLLDQTRRMVRAQGITVDFTDAAVDWLAERGYQPEYGARPLRRTIQR
EVDNELSRLLLDGRVAEGGRVTVDVEDGRLAFRTPERPVPEL
MTSGYMGPEGDPFAEFLARFFGGPRPRQIDIGRLLSQPARELVRGAAQYAAEHGSRDLDTEHLLRAALSTEPTRGLLSRA
GADPDSLASQIDERTGPVQHPPGEVPPPTSLSLTPAVKRALLDAHELARSTGTGYIGPEHVLSALAANPDSAAGHILNAA
RFAPSNVPTDSPEAAKARTESTRATNTPTLDKYGRDLTDLAQQGRIDPVIGREEEIEQTVEVLSRRGKNNPVLIGDAGVG
KTAVVEGLAQRITDGDVPDVLAGRRVVALDLTGVVAGTRYRGDFEERMNNIVGEIRAHSDQLIIFIDELHTVVGAGGGGE
GGSMDAGNILKPALARGELHIVGATTLEEYRRIEKDAALARRFQPILVPEPTTADAIEILRGLRDRYEAHHQVRYTDEAL
VAAVEMSDRYLTDRRLPDKAIDLIDQAGARVRLRSRTKGTDVRALEREVDQLVRDKDQAVADEQYEQATQLRDRIVELKQ
RISEATGDGQADEGLDLVVDTESIAEVVSRQTGIPVSSLTQEEKDRLLGLESHLHERVVGQDEAVRVVSDAVLRSRAGLS
SPDRPIGSFLFLGPTGVGKTELARALAEALFGSEDRMVRLDMSEYQERHTVSRLVGAPPGYVGHEEAGQLTEVVRRHPYS
LLLLDEVEKAHPDVFNILLQVLDDGRLTDSQGRTVDFSNTVVVMTSNLGSDVITRRGAGIGFGSGGAEADEEARREQVLR
PLREHFRPEFLNRVDEIVVFRQLSGEQLRQITSLLLDQTRRMVRAQGITVDFTDAAVDWLAERGYQPEYGARPLRRTIQR
EVDNELSRLLLDGRVAEGGRVTVDVEDGRLAFRTPERPVPEL
Nucleotide
Download Length: 2529 bp
>NTDB_id=113360 NI25_RS06320 WP_061441509.1 1467653..1470181(+) (clpC) [Streptomyces sp. CCM_MD2014]
ATGACCAGCGGCTACATGGGCCCGGAGGGCGACCCGTTCGCGGAGTTCCTGGCACGCTTCTTCGGCGGGCCCAGGCCGAG
GCAGATCGACATCGGCCGACTGCTCAGCCAGCCCGCCCGGGAGCTGGTGCGCGGCGCCGCCCAGTACGCCGCCGAGCACG
GCAGCCGGGATCTGGACACCGAGCACCTGCTGCGGGCCGCGCTCTCCACCGAGCCGACCCGGGGACTGCTCAGCCGGGCC
GGTGCCGACCCCGACTCGCTGGCCTCGCAGATCGACGAGCGGACCGGCCCGGTGCAGCACCCGCCCGGCGAGGTCCCGCC
GCCCACGTCTCTCTCGCTCACCCCGGCCGTCAAGCGGGCCCTGCTCGACGCGCACGAGCTGGCCCGCTCCACCGGCACCG
GCTACATCGGCCCGGAGCACGTGCTCAGCGCCCTGGCCGCCAACCCGGACTCGGCCGCCGGGCACATCCTGAACGCGGCC
CGGTTCGCGCCGTCCAACGTGCCCACGGACTCCCCGGAGGCCGCGAAGGCCCGCACCGAGAGCACCCGGGCCACGAACAC
CCCGACCCTCGACAAGTACGGCCGCGACCTCACCGATCTGGCCCAGCAGGGCCGCATCGACCCGGTGATCGGCCGCGAGG
AGGAGATCGAGCAGACCGTCGAGGTGCTCTCCCGGCGCGGCAAGAACAACCCCGTCCTGATCGGTGACGCCGGGGTCGGC
AAGACCGCCGTCGTGGAGGGGCTGGCGCAGCGCATCACCGACGGCGACGTGCCCGACGTGCTGGCGGGACGGCGGGTGGT
CGCCCTCGACCTGACCGGGGTGGTCGCCGGAACCCGCTACCGGGGCGACTTCGAGGAGCGGATGAACAACATCGTGGGCG
AGATCCGCGCCCACTCCGACCAGCTGATCATCTTCATCGACGAGCTGCACACCGTCGTCGGCGCCGGCGGGGGCGGCGAG
GGCGGGTCGATGGACGCCGGGAACATCCTCAAGCCGGCCCTGGCCCGTGGCGAACTGCACATCGTGGGCGCCACCACGCT
GGAGGAGTACCGCAGGATCGAGAAGGACGCGGCCCTCGCCCGCCGCTTCCAGCCCATCCTGGTGCCCGAGCCCACCACCG
CCGACGCCATCGAGATCCTGCGCGGTCTGCGCGACCGCTACGAGGCCCACCACCAGGTCCGCTACACCGACGAGGCGCTG
GTCGCGGCCGTGGAGATGTCCGACCGCTACCTCACCGACCGGCGGCTGCCCGACAAGGCCATCGACCTGATCGACCAGGC
GGGTGCCCGGGTCCGGCTCCGGTCGCGCACCAAGGGCACCGACGTGCGGGCCCTGGAGCGCGAGGTCGACCAGCTGGTCC
GGGACAAGGACCAGGCGGTCGCGGACGAGCAGTACGAACAGGCGACGCAGCTGCGGGACCGGATCGTCGAACTGAAGCAG
CGCATCTCCGAGGCCACCGGCGACGGGCAGGCCGACGAGGGGCTCGACCTGGTCGTGGACACCGAGTCCATCGCCGAGGT
GGTCTCCCGGCAGACCGGCATCCCGGTCAGCAGCCTCACCCAGGAGGAGAAGGACCGCCTGCTGGGCCTGGAGTCCCACC
TGCACGAGCGGGTGGTCGGCCAGGACGAGGCCGTACGGGTCGTCTCCGACGCCGTGCTGCGCTCGCGCGCCGGGCTCTCC
AGTCCCGACCGGCCCATCGGCAGCTTCCTCTTCCTCGGCCCGACCGGCGTCGGCAAGACCGAACTGGCCCGGGCGCTGGC
CGAGGCGCTGTTCGGGAGCGAGGACCGGATGGTGCGCCTGGACATGAGCGAGTACCAGGAGCGCCACACGGTCAGCCGCC
TGGTCGGCGCCCCGCCCGGCTACGTCGGGCACGAGGAGGCCGGTCAGCTGACCGAGGTGGTGCGCCGCCACCCGTACTCG
CTGCTGCTGCTCGACGAGGTGGAGAAGGCGCACCCGGACGTCTTCAACATCCTGCTCCAGGTCCTGGACGACGGGCGGCT
GACCGACTCGCAGGGCAGGACGGTGGACTTCTCCAACACGGTCGTCGTGATGACCAGCAACCTGGGCTCCGACGTGATCA
CCCGGCGCGGCGCCGGGATCGGCTTCGGCTCGGGCGGCGCGGAGGCGGACGAGGAGGCCCGGCGCGAGCAGGTGCTGCGC
CCGCTGCGCGAGCACTTCCGGCCCGAGTTCCTGAACCGCGTCGACGAGATCGTGGTCTTCCGCCAGCTCAGCGGCGAGCA
ACTGCGGCAGATCACCAGCCTGCTCCTCGACCAGACCCGCCGGATGGTACGCGCGCAGGGCATCACCGTGGACTTCACCG
ACGCGGCCGTGGACTGGCTCGCCGAGCGCGGCTACCAGCCGGAGTACGGCGCGCGTCCGCTGCGCCGCACCATCCAGCGC
GAGGTCGACAACGAGCTGTCCCGGCTGCTGCTCGACGGCCGGGTCGCCGAGGGCGGCCGGGTGACGGTCGACGTCGAGGA
CGGGCGGCTGGCGTTCCGGACGCCGGAACGGCCCGTCCCCGAACTGTGA
ATGACCAGCGGCTACATGGGCCCGGAGGGCGACCCGTTCGCGGAGTTCCTGGCACGCTTCTTCGGCGGGCCCAGGCCGAG
GCAGATCGACATCGGCCGACTGCTCAGCCAGCCCGCCCGGGAGCTGGTGCGCGGCGCCGCCCAGTACGCCGCCGAGCACG
GCAGCCGGGATCTGGACACCGAGCACCTGCTGCGGGCCGCGCTCTCCACCGAGCCGACCCGGGGACTGCTCAGCCGGGCC
GGTGCCGACCCCGACTCGCTGGCCTCGCAGATCGACGAGCGGACCGGCCCGGTGCAGCACCCGCCCGGCGAGGTCCCGCC
GCCCACGTCTCTCTCGCTCACCCCGGCCGTCAAGCGGGCCCTGCTCGACGCGCACGAGCTGGCCCGCTCCACCGGCACCG
GCTACATCGGCCCGGAGCACGTGCTCAGCGCCCTGGCCGCCAACCCGGACTCGGCCGCCGGGCACATCCTGAACGCGGCC
CGGTTCGCGCCGTCCAACGTGCCCACGGACTCCCCGGAGGCCGCGAAGGCCCGCACCGAGAGCACCCGGGCCACGAACAC
CCCGACCCTCGACAAGTACGGCCGCGACCTCACCGATCTGGCCCAGCAGGGCCGCATCGACCCGGTGATCGGCCGCGAGG
AGGAGATCGAGCAGACCGTCGAGGTGCTCTCCCGGCGCGGCAAGAACAACCCCGTCCTGATCGGTGACGCCGGGGTCGGC
AAGACCGCCGTCGTGGAGGGGCTGGCGCAGCGCATCACCGACGGCGACGTGCCCGACGTGCTGGCGGGACGGCGGGTGGT
CGCCCTCGACCTGACCGGGGTGGTCGCCGGAACCCGCTACCGGGGCGACTTCGAGGAGCGGATGAACAACATCGTGGGCG
AGATCCGCGCCCACTCCGACCAGCTGATCATCTTCATCGACGAGCTGCACACCGTCGTCGGCGCCGGCGGGGGCGGCGAG
GGCGGGTCGATGGACGCCGGGAACATCCTCAAGCCGGCCCTGGCCCGTGGCGAACTGCACATCGTGGGCGCCACCACGCT
GGAGGAGTACCGCAGGATCGAGAAGGACGCGGCCCTCGCCCGCCGCTTCCAGCCCATCCTGGTGCCCGAGCCCACCACCG
CCGACGCCATCGAGATCCTGCGCGGTCTGCGCGACCGCTACGAGGCCCACCACCAGGTCCGCTACACCGACGAGGCGCTG
GTCGCGGCCGTGGAGATGTCCGACCGCTACCTCACCGACCGGCGGCTGCCCGACAAGGCCATCGACCTGATCGACCAGGC
GGGTGCCCGGGTCCGGCTCCGGTCGCGCACCAAGGGCACCGACGTGCGGGCCCTGGAGCGCGAGGTCGACCAGCTGGTCC
GGGACAAGGACCAGGCGGTCGCGGACGAGCAGTACGAACAGGCGACGCAGCTGCGGGACCGGATCGTCGAACTGAAGCAG
CGCATCTCCGAGGCCACCGGCGACGGGCAGGCCGACGAGGGGCTCGACCTGGTCGTGGACACCGAGTCCATCGCCGAGGT
GGTCTCCCGGCAGACCGGCATCCCGGTCAGCAGCCTCACCCAGGAGGAGAAGGACCGCCTGCTGGGCCTGGAGTCCCACC
TGCACGAGCGGGTGGTCGGCCAGGACGAGGCCGTACGGGTCGTCTCCGACGCCGTGCTGCGCTCGCGCGCCGGGCTCTCC
AGTCCCGACCGGCCCATCGGCAGCTTCCTCTTCCTCGGCCCGACCGGCGTCGGCAAGACCGAACTGGCCCGGGCGCTGGC
CGAGGCGCTGTTCGGGAGCGAGGACCGGATGGTGCGCCTGGACATGAGCGAGTACCAGGAGCGCCACACGGTCAGCCGCC
TGGTCGGCGCCCCGCCCGGCTACGTCGGGCACGAGGAGGCCGGTCAGCTGACCGAGGTGGTGCGCCGCCACCCGTACTCG
CTGCTGCTGCTCGACGAGGTGGAGAAGGCGCACCCGGACGTCTTCAACATCCTGCTCCAGGTCCTGGACGACGGGCGGCT
GACCGACTCGCAGGGCAGGACGGTGGACTTCTCCAACACGGTCGTCGTGATGACCAGCAACCTGGGCTCCGACGTGATCA
CCCGGCGCGGCGCCGGGATCGGCTTCGGCTCGGGCGGCGCGGAGGCGGACGAGGAGGCCCGGCGCGAGCAGGTGCTGCGC
CCGCTGCGCGAGCACTTCCGGCCCGAGTTCCTGAACCGCGTCGACGAGATCGTGGTCTTCCGCCAGCTCAGCGGCGAGCA
ACTGCGGCAGATCACCAGCCTGCTCCTCGACCAGACCCGCCGGATGGTACGCGCGCAGGGCATCACCGTGGACTTCACCG
ACGCGGCCGTGGACTGGCTCGCCGAGCGCGGCTACCAGCCGGAGTACGGCGCGCGTCCGCTGCGCCGCACCATCCAGCGC
GAGGTCGACAACGAGCTGTCCCGGCTGCTGCTCGACGGCCGGGTCGCCGAGGGCGGCCGGGTGACGGTCGACGTCGAGGA
CGGGCGGCTGGCGTTCCGGACGCCGGAACGGCCCGTCCCCGAACTGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
48.526 |
96.675 |
0.469 |
| clpC | Streptococcus pneumoniae Rx1 |
44.79 |
99.169 |
0.444 |
| clpC | Streptococcus pneumoniae TIGR4 |
44.79 |
99.169 |
0.444 |
| clpC | Streptococcus pneumoniae D39 |
44.79 |
99.169 |
0.444 |
| clpC | Streptococcus mutans UA159 |
43.234 |
99.169 |
0.429 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
43.758 |
96.081 |
0.42 |
| clpC | Streptococcus thermophilus LMD-9 |
47.012 |
89.43 |
0.42 |
| clpE | Streptococcus mutans UA159 |
50.646 |
82.779 |
0.419 |
| clpC | Streptococcus thermophilus LMG 18311 |
46.296 |
89.786 |
0.416 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
52.244 |
74.109 |
0.387 |
| clpE | Streptococcus pneumoniae Rx1 |
50.801 |
74.109 |
0.376 |
| clpE | Streptococcus pneumoniae D39 |
50.801 |
74.109 |
0.376 |
| clpE | Streptococcus pneumoniae R6 |
50.801 |
74.109 |
0.376 |
| clpE | Streptococcus pneumoniae TIGR4 |
50.801 |
74.109 |
0.376 |