Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JMW45_RS16300 Genome accession   NZ_LR890323
Coordinates   3261199..3261795 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain INF348 isolate INF348     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3256199..3266795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMW45_RS16285 helD 3256407..3258461 (-) 2055 WP_014907883.1 DNA helicase IV -
  JMW45_RS16290 - 3258586..3259032 (+) 447 WP_002898425.1 YccF domain-containing protein -
  JMW45_RS16295 yccS 3259050..3261185 (+) 2136 WP_002898422.1 YccS family putative transporter -
  JMW45_RS16300 sxy/tfoX 3261199..3261795 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  JMW45_RS16305 sulA 3262144..3262653 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  JMW45_RS16310 ompA 3263006..3264076 (+) 1071 WP_002898408.1 porin OmpA -
  JMW45_RS16315 matP 3264208..3264660 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  JMW45_RS16320 - 3264846..3266603 (+) 1758 WP_004147851.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=1133584 JMW45_RS16300 WP_004179217.1 3261199..3261795(-) (sxy/tfoX) [Klebsiella pneumoniae strain INF348 isolate INF348]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1133584 JMW45_RS16300 WP_004179217.1 3261199..3261795(-) (sxy/tfoX) [Klebsiella pneumoniae strain INF348 isolate INF348]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment