Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JMX52_RS16970 Genome accession   NZ_LR890312
Coordinates   3615848..3616471 (-) Length   207 a.a.
NCBI ID   WP_032726136.1    Uniprot ID   -
Organism   Klebsiella oxytoca strain MSB1_10D isolate MSB1_10D     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3610848..3621471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMX52_RS16955 helD 3611084..3613138 (-) 2055 WP_016808043.1 DNA helicase IV -
  JMX52_RS16960 - 3613261..3613707 (+) 447 WP_004100782.1 YccF domain-containing protein -
  JMX52_RS16965 yccS 3613725..3615860 (+) 2136 WP_023320658.1 YccS family putative transporter -
  JMX52_RS16970 sxy/tfoX 3615848..3616471 (-) 624 WP_032726136.1 TfoX/Sxy family DNA transformation protein Regulator
  JMX52_RS16975 sulA 3616933..3617442 (+) 510 WP_032726007.1 SOS-induced cell division inhibitor SulA -
  JMX52_RS16980 ompA 3617796..3618866 (+) 1071 WP_004100770.1 porin OmpA -
  JMX52_RS16985 matP 3618977..3619429 (-) 453 WP_004100768.1 macrodomain Ter protein MatP -
  JMX52_RS16990 - 3619615..3621372 (+) 1758 WP_016808048.1 Lon protease family protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23674.68 Da        Isoelectric Point: 10.2095

>NTDB_id=1133560 JMX52_RS16970 WP_032726136.1 3615848..3616471(-) (sxy/tfoX) [Klebsiella oxytoca strain MSB1_10D isolate MSB1_10D]
MKKLVCLRIHQFRACLSPLGKISCRPLFGGYSLAIDNTVFAMMAEGEIYLRVCEQSAQYRVAHKNPLLKMQKNGRLVALK
YYHIDEGLWRDSKMLFHLSALSLQTARNEKHRQRHSGRLKNLPNISFHMELQLINSGIKDELTLRKIGAKEAWLRLRKMN
KALTVNVLYSLEGAIAGVHAATLPTQQRQELEEWAAVQVQEMEGYSG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=1133560 JMX52_RS16970 WP_032726136.1 3615848..3616471(-) (sxy/tfoX) [Klebsiella oxytoca strain MSB1_10D isolate MSB1_10D]
ATGAAGAAACTCGTATGTCTTAGGATCCATCAGTTTCGGGCATGTTTGTCTCCATTAGGAAAAATAAGCTGTCGGCCCTT
ATTTGGTGGCTATAGCCTGGCGATAGATAATACCGTGTTTGCCATGATGGCTGAGGGGGAGATCTATCTTCGGGTTTGTG
AGCAGAGTGCGCAGTATCGCGTGGCGCATAAAAACCCGCTGTTGAAGATGCAGAAGAATGGTCGTCTGGTTGCGCTTAAG
TACTATCATATAGATGAAGGGCTTTGGCGTGACAGCAAAATGCTTTTTCATTTATCAGCGCTATCATTACAGACCGCTCG
TAATGAAAAACATCGGCAGCGACATTCCGGAAGATTAAAGAATCTTCCAAATATTAGTTTTCACATGGAGCTCCAGTTGA
TTAATTCAGGTATCAAAGATGAATTAACGCTGCGAAAAATTGGCGCTAAAGAAGCCTGGCTCAGACTACGAAAAATGAAT
AAAGCGCTAACGGTAAACGTCCTTTATTCATTAGAGGGAGCTATTGCGGGCGTGCATGCGGCCACGCTCCCGACGCAACA
GCGTCAGGAGCTTGAGGAGTGGGCGGCGGTACAGGTACAGGAGATGGAGGGCTACTCAGGTTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(15-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

52.308

94.203

0.493

Multiple sequence alignment