Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JMW65_RS16405 Genome accession   NZ_LR890291
Coordinates   3315872..3316468 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain KSB1_1B     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3310872..3321468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMW65_RS16390 helD 3311080..3313134 (-) 2055 WP_014907883.1 DNA helicase IV -
  JMW65_RS16395 - 3313259..3313705 (+) 447 WP_094644910.1 YccF domain-containing protein -
  JMW65_RS16400 yccS 3313723..3315858 (+) 2136 WP_002898422.1 YccS family putative transporter -
  JMW65_RS16405 sxy/tfoX 3315872..3316468 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  JMW65_RS16410 - 3316559..3316774 (+) 216 WP_009485781.1 hypothetical protein -
  JMW65_RS16415 sulA 3316817..3317326 (+) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  JMW65_RS16420 ompA 3317679..3318749 (+) 1071 WP_002898408.1 porin OmpA -
  JMW65_RS16425 matP 3318881..3319333 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  JMW65_RS16430 - 3319519..3321276 (+) 1758 WP_094644909.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=1133514 JMW65_RS16405 WP_004179217.1 3315872..3316468(-) (sxy/tfoX) [Klebsiella pneumoniae strain KSB1_1B]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1133514 JMW65_RS16405 WP_004179217.1 3315872..3316468(-) (sxy/tfoX) [Klebsiella pneumoniae strain KSB1_1B]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTATTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment