Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JMW08_RS14255 Genome accession   NZ_LR890288
Coordinates   2963034..2963663 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain MSB1_1A isolate MSB1_1A     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2958034..2968663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMW08_RS14240 helD 2958276..2960330 (-) 2055 WP_001295354.1 DNA helicase IV -
  JMW08_RS14245 yccF 2960453..2960899 (+) 447 WP_001261235.1 YccF domain-containing protein -
  JMW08_RS14250 yccS 2960909..2963071 (+) 2163 WP_000875058.1 YccS family putative transporter -
  JMW08_RS14255 sxy/tfoX 2963034..2963663 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JMW08_RS14260 sulA 2963882..2964391 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  JMW08_RS14265 ompA 2964748..2965788 (+) 1041 WP_000750416.1 porin OmpA -
  JMW08_RS14270 matP 2965864..2966316 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  JMW08_RS14275 ycbZ 2966502..2968262 (+) 1761 WP_000152888.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1133491 JMW08_RS14255 WP_000839153.1 2963034..2963663(-) (sxy/tfoX) [Escherichia coli strain MSB1_1A isolate MSB1_1A]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1133491 JMW08_RS14255 WP_000839153.1 2963034..2963663(-) (sxy/tfoX) [Escherichia coli strain MSB1_1A isolate MSB1_1A]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment