Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JMW01_RS22230 Genome accession   NZ_LR890270
Coordinates   4744212..4744841 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain MINF_7C isolate MINF_7C     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4739212..4749841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMW01_RS22210 ycbZ 4739600..4741360 (-) 1761 WP_001586869.1 Lon protease family protein -
  JMW01_RS22215 matP 4741546..4741998 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  JMW01_RS22220 ompA 4742075..4743127 (-) 1053 WP_001305912.1 porin OmpA -
  JMW01_RS22225 sulA 4743484..4743993 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  JMW01_RS22230 sxy/tfoX 4744212..4744841 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JMW01_RS22235 yccS 4744804..4746966 (-) 2163 WP_000875037.1 YccS family putative transporter -
  JMW01_RS22240 yccF 4746976..4747422 (-) 447 WP_001261235.1 YccF domain-containing protein -
  JMW01_RS22245 helD 4747545..4749599 (+) 2055 WP_001305911.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1133477 JMW01_RS22230 WP_000839153.1 4744212..4744841(+) (sxy/tfoX) [Escherichia coli strain MINF_7C isolate MINF_7C]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1133477 JMW01_RS22230 WP_000839153.1 4744212..4744841(+) (sxy/tfoX) [Escherichia coli strain MINF_7C isolate MINF_7C]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGTGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment