Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JMV98_RS16580 Genome accession   NZ_LR890235
Coordinates   3345387..3345983 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain INF334 isolate INF334     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3340387..3350983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMV98_RS16565 helD 3340595..3342649 (-) 2055 WP_032416944.1 DNA helicase IV -
  JMV98_RS16570 - 3342774..3343220 (+) 447 WP_002898425.1 YccF domain-containing protein -
  JMV98_RS16575 yccS 3343238..3345373 (+) 2136 WP_002898422.1 YccS family putative transporter -
  JMV98_RS16580 sxy/tfoX 3345387..3345983 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  JMV98_RS16585 sulA 3346332..3346841 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  JMV98_RS16590 ompA 3347194..3348264 (+) 1071 WP_002898408.1 porin OmpA -
  JMV98_RS16595 matP 3348396..3348848 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  JMV98_RS16600 - 3349034..3350791 (+) 1758 WP_016529118.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=1133422 JMV98_RS16580 WP_004179217.1 3345387..3345983(-) (sxy/tfoX) [Klebsiella pneumoniae strain INF334 isolate INF334]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1133422 JMV98_RS16580 WP_004179217.1 3345387..3345983(-) (sxy/tfoX) [Klebsiella pneumoniae strain INF334 isolate INF334]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAAAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment