Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JMW18_RS16405 Genome accession   NZ_LR890209
Coordinates   3311168..3311764 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae isolate INF022-sc-2279895     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3306168..3316764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMW18_RS16390 helD 3306376..3308430 (-) 2055 WP_040236859.1 DNA helicase IV -
  JMW18_RS16395 - 3308555..3309001 (+) 447 WP_002898425.1 YccF domain-containing protein -
  JMW18_RS16400 yccS 3309019..3311154 (+) 2136 WP_002898422.1 YccS family putative transporter -
  JMW18_RS16405 sxy/tfoX 3311168..3311764 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  JMW18_RS16410 - 3311855..3312070 (+) 216 WP_009485781.1 hypothetical protein -
  JMW18_RS16415 sulA 3312113..3312622 (+) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  JMW18_RS16420 ompA 3312975..3314051 (+) 1077 WP_032432880.1 porin OmpA -
  JMW18_RS16425 matP 3314184..3314636 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  JMW18_RS16430 - 3314822..3316579 (+) 1758 WP_004147851.1 AAA family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=1133374 JMW18_RS16405 WP_004179217.1 3311168..3311764(-) (sxy/tfoX) [Klebsiella pneumoniae isolate INF022-sc-2279895]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1133374 JMW18_RS16405 WP_004179217.1 3311168..3311764(-) (sxy/tfoX) [Klebsiella pneumoniae isolate INF022-sc-2279895]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCCACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment