Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JMV89_RS15325 Genome accession   NZ_LR890198
Coordinates   3191846..3192475 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain MINF_1D isolate MINF_1D     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3186846..3197475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMV89_RS15310 helD 3187088..3189142 (-) 2055 WP_001350178.1 DNA helicase IV -
  JMV89_RS15315 yccF 3189265..3189711 (+) 447 WP_001261236.1 YccF domain-containing protein -
  JMV89_RS15320 yccS 3189721..3191883 (+) 2163 WP_000875008.1 YccS family putative transporter -
  JMV89_RS15325 sxy/tfoX 3191846..3192475 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  JMV89_RS15330 sulA 3192694..3193203 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  JMV89_RS15335 ompA 3193559..3194599 (+) 1041 WP_001518466.1 porin OmpA -
  JMV89_RS15340 matP 3194675..3195127 (-) 453 WP_000877152.1 macrodomain Ter protein MatP -
  JMV89_RS15345 ycbZ 3195313..3197073 (+) 1761 WP_000156492.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1133328 JMV89_RS15325 WP_000839153.1 3191846..3192475(-) (sxy/tfoX) [Escherichia coli strain MINF_1D isolate MINF_1D]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1133328 JMV89_RS15325 WP_000839153.1 3191846..3192475(-) (sxy/tfoX) [Escherichia coli strain MINF_1D isolate MINF_1D]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGTATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCAAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment