Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JMV85_RS16905 Genome accession   NZ_LR890185
Coordinates   3424337..3424933 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain INF072 isolate INF072     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3419337..3429933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMV85_RS16890 helD 3419545..3421599 (-) 2055 WP_004179218.1 DNA helicase IV -
  JMV85_RS16895 - 3421724..3422170 (+) 447 WP_002898425.1 YccF domain-containing protein -
  JMV85_RS16900 yccS 3422188..3424323 (+) 2136 WP_002898422.1 YccS family putative transporter -
  JMV85_RS16905 sxy/tfoX 3424337..3424933 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  JMV85_RS16910 sulA 3425282..3425791 (+) 510 WP_004179215.1 SOS-induced cell division inhibitor SulA -
  JMV85_RS16915 ompA 3426144..3427214 (+) 1071 WP_002898408.1 porin OmpA -
  JMV85_RS16920 matP 3427346..3427798 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  JMV85_RS16925 - 3427984..3429741 (+) 1758 WP_016529118.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=1133280 JMV85_RS16905 WP_004179217.1 3424337..3424933(-) (sxy/tfoX) [Klebsiella pneumoniae strain INF072 isolate INF072]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1133280 JMV85_RS16905 WP_004179217.1 3424337..3424933(-) (sxy/tfoX) [Klebsiella pneumoniae strain INF072 isolate INF072]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCCACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment